Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav5d-4Q5R1F6 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC17.2■□□□□ 0.34
Trav5d-4Q5R1F6 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav5d-4Q5R1F6 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav5d-4Q5R1F6 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Trav5d-4Q5R1F6 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav5d-4Q5R1F6 Notumos-201ENSMUST00000151998 2659 ntBASIC17.19■□□□□ 0.34
Trav5d-4Q5R1F6 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trav5d-4Q5R1F6 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav5d-4Q5R1F6 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC17.19■□□□□ 0.34
Trav5d-4Q5R1F6 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav5d-4Q5R1F6 Gm9870-201ENSMUST00000063874 645 ntBASIC17.19■□□□□ 0.34
Trav5d-4Q5R1F6 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav5d-4Q5R1F6 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Trav5d-4Q5R1F6 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC17.19■□□□□ 0.34
Trav5d-4Q5R1F6 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav5d-4Q5R1F6 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav5d-4Q5R1F6 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav5d-4Q5R1F6 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trav5d-4Q5R1F6 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav5d-4Q5R1F6 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav5d-4Q5R1F6 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trav5d-4Q5R1F6 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav5d-4Q5R1F6 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Trav5d-4Q5R1F6 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav5d-4Q5R1F6 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trav5d-4Q5R1F6 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav5d-4Q5R1F6 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trav5d-4Q5R1F6 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trav5d-4Q5R1F6 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC17.17■□□□□ 0.34
Trav5d-4Q5R1F6 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trav5d-4Q5R1F6 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
Trav5d-4Q5R1F6 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav5d-4Q5R1F6 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav5d-4Q5R1F6 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
Trav5d-4Q5R1F6 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC17.17■□□□□ 0.34
Trav5d-4Q5R1F6 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
Trav5d-4Q5R1F6 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5d-4Q5R1F6 Gm34220-201ENSMUST00000223001 2709 ntBASIC17.16■□□□□ 0.34
Trav5d-4Q5R1F6 Gm14117-201ENSMUST00000122417 843 ntBASIC17.16■□□□□ 0.34
Trav5d-4Q5R1F6 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Trav5d-4Q5R1F6 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5d-4Q5R1F6 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
Trav5d-4Q5R1F6 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5d-4Q5R1F6 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5d-4Q5R1F6 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5d-4Q5R1F6 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5d-4Q5R1F6 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5d-4Q5R1F6 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5d-4Q5R1F6 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC17.16■□□□□ 0.34
Trav5d-4Q5R1F6 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Gm22238-201ENSMUST00000175222 88 ntBASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav5d-4Q5R1F6 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 Gm45102-201ENSMUST00000207427 857 ntBASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 Rps24-207ENSMUST00000224568 714 ntBASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav5d-4Q5R1F6 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5d-4Q5R1F6 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav5d-4Q5R1F6 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 296.9 ms