Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col28a1Q2UY11 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col28a1Q2UY11 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col28a1Q2UY11 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC19.37■□□□□ 0.69
Col28a1Q2UY11 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col28a1Q2UY11 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col28a1Q2UY11 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col28a1Q2UY11 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col28a1Q2UY11 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col28a1Q2UY11 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC19.37■□□□□ 0.69
Col28a1Q2UY11 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Col28a1Q2UY11 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col28a1Q2UY11 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC19.36■□□□□ 0.69
Col28a1Q2UY11 Etf1-202ENSMUST00000180351 108 ntBASIC19.36■□□□□ 0.69
Col28a1Q2UY11 Gm10232-201ENSMUST00000089221 720 ntBASIC19.36■□□□□ 0.69
Col28a1Q2UY11 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col28a1Q2UY11 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Col28a1Q2UY11 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col28a1Q2UY11 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col28a1Q2UY11 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.35■□□□□ 0.69
Col28a1Q2UY11 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC19.35■□□□□ 0.69
Col28a1Q2UY11 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col28a1Q2UY11 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col28a1Q2UY11 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col28a1Q2UY11 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col28a1Q2UY11 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col28a1Q2UY11 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Col28a1Q2UY11 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col28a1Q2UY11 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col28a1Q2UY11 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col28a1Q2UY11 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col28a1Q2UY11 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col28a1Q2UY11 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col28a1Q2UY11 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col28a1Q2UY11 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC19.33■□□□□ 0.69
Col28a1Q2UY11 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Col28a1Q2UY11 Hsf1-204ENSMUST00000226872 2104 ntBASIC19.33■□□□□ 0.69
Col28a1Q2UY11 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col28a1Q2UY11 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC19.33■□□□□ 0.69
Col28a1Q2UY11 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col28a1Q2UY11 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col28a1Q2UY11 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col28a1Q2UY11 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col28a1Q2UY11 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Col28a1Q2UY11 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col28a1Q2UY11 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col28a1Q2UY11 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col28a1Q2UY11 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC19.31■□□□□ 0.68
Col28a1Q2UY11 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC19.31■□□□□ 0.68
Col28a1Q2UY11 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Col28a1Q2UY11 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col28a1Q2UY11 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col28a1Q2UY11 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col28a1Q2UY11 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col28a1Q2UY11 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Col28a1Q2UY11 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Col28a1Q2UY11 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col28a1Q2UY11 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col28a1Q2UY11 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col28a1Q2UY11 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC19.29■□□□□ 0.68
Col28a1Q2UY11 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col28a1Q2UY11 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC19.29■□□□□ 0.68
Col28a1Q2UY11 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col28a1Q2UY11 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col28a1Q2UY11 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col28a1Q2UY11 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col28a1Q2UY11 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col28a1Q2UY11 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Col28a1Q2UY11 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col28a1Q2UY11 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col28a1Q2UY11 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col28a1Q2UY11 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col28a1Q2UY11 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col28a1Q2UY11 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC19.28■□□□□ 0.68
Col28a1Q2UY11 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC19.28■□□□□ 0.68
Col28a1Q2UY11 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col28a1Q2UY11 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC19.28■□□□□ 0.68
Col28a1Q2UY11 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col28a1Q2UY11 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col28a1Q2UY11 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col28a1Q2UY11 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC19.27■□□□□ 0.68
Col28a1Q2UY11 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Col28a1Q2UY11 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms