Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.68■□□□□ 0.9
Sox1P53783 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sox1P53783 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sox1P53783 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Sox1P53783 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Sox1P53783 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sox1P53783 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sox1P53783 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.67■□□□□ 0.9
Sox1P53783 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sox1P53783 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC20.66■□□□□ 0.9
Sox1P53783 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC20.66■□□□□ 0.9
Sox1P53783 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.66■□□□□ 0.9
Sox1P53783 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sox1P53783 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sox1P53783 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sox1P53783 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sox1P53783 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sox1P53783 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Sox1P53783 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Sox1P53783 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Sox1P53783 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.65■□□□□ 0.9
Sox1P53783 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Sox1P53783 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sox1P53783 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Sox1P53783 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Sox1P53783 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Sox1P53783 Gm6365-201ENSMUST00000054711 744 ntBASIC20.65■□□□□ 0.9
Sox1P53783 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Sox1P53783 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Sox1P53783 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
Sox1P53783 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sox1P53783 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Sox1P53783 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC20.64■□□□□ 0.89
Sox1P53783 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sox1P53783 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC20.64■□□□□ 0.89
Sox1P53783 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sox1P53783 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sox1P53783 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sox1P53783 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Sox1P53783 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Sox1P53783 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.63■□□□□ 0.89
Sox1P53783 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Sox1P53783 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sox1P53783 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sox1P53783 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sox1P53783 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sox1P53783 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sox1P53783 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sox1P53783 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.62■□□□□ 0.89
Sox1P53783 AL672049.1-201ENSMUST00000197943 91 ntBASIC20.62■□□□□ 0.89
Sox1P53783 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sox1P53783 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sox1P53783 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sox1P53783 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC20.61■□□□□ 0.89
Sox1P53783 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sox1P53783 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sox1P53783 Gm7290-201ENSMUST00000104990 617 ntBASIC20.61■□□□□ 0.89
Sox1P53783 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sox1P53783 Gm12918-201ENSMUST00000120234 636 ntBASIC20.61■□□□□ 0.89
Sox1P53783 Gm15710-201ENSMUST00000121821 636 ntBASIC20.61■□□□□ 0.89
Sox1P53783 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Sox1P53783 Gm5075-201ENSMUST00000196916 622 ntBASIC20.61■□□□□ 0.89
Sox1P53783 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Sox1P53783 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.61■□□□□ 0.89
Sox1P53783 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.61■□□□□ 0.89
Sox1P53783 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC20.61■□□□□ 0.89
Sox1P53783 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sox1P53783 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sox1P53783 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Sox1P53783 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sox1P53783 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sox1P53783 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sox1P53783 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sox1P53783 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sox1P53783 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Sox1P53783 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Sox1P53783 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sox1P53783 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sox1P53783 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Sox1P53783 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Sox1P53783 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Sox1P53783 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Sox1P53783 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sox1P53783 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sox1P53783 Gm15565-201ENSMUST00000118890 427 ntBASIC20.57■□□□□ 0.88
Sox1P53783 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Sox1P53783 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Sox1P53783 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Sox1P53783 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sox1P53783 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sox1P53783 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sox1P53783 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sox1P53783 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sox1P53783 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Sox1P53783 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sox1P53783 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sox1P53783 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC20.56■□□□□ 0.88
Sox1P53783 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC20.56■□□□□ 0.88
Sox1P53783 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.56■□□□□ 0.88
Sox1P53783 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms