Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.25■□□□□ 0.99
Shmt1P50431 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Shmt1P50431 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Shmt1P50431 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Shmt1P50431 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Shmt1P50431 Mir6236-201ENSMUST00000184437 123 ntBASIC21.24■□□□□ 0.99
Shmt1P50431 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Shmt1P50431 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Shmt1P50431 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Shmt1P50431 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Shmt1P50431 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC21.23■□□□□ 0.99
Shmt1P50431 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC21.23■□□□□ 0.99
Shmt1P50431 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
Shmt1P50431 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Shmt1P50431 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Shmt1P50431 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Shmt1P50431 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Shmt1P50431 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Shmt1P50431 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Shmt1P50431 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Shmt1P50431 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Shmt1P50431 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Shmt1P50431 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Shmt1P50431 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Shmt1P50431 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Shmt1P50431 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shmt1P50431 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shmt1P50431 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shmt1P50431 Gm37035-201ENSMUST00000194809 2148 ntBASIC21.21■□□□□ 0.99
Shmt1P50431 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Shmt1P50431 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shmt1P50431 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shmt1P50431 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Shmt1P50431 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Shmt1P50431 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Shmt1P50431 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC21.2■□□□□ 0.98
Shmt1P50431 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
Shmt1P50431 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Shmt1P50431 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.19■□□□□ 0.98
Shmt1P50431 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Shmt1P50431 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shmt1P50431 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shmt1P50431 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.19■□□□□ 0.98
Shmt1P50431 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shmt1P50431 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Shmt1P50431 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shmt1P50431 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shmt1P50431 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC21.19■□□□□ 0.98
Shmt1P50431 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shmt1P50431 Spcs1-204ENSMUST00000226782 949 ntBASIC21.19■□□□□ 0.98
Shmt1P50431 Wdr70-203ENSMUST00000227371 1130 ntBASIC21.19■□□□□ 0.98
Shmt1P50431 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shmt1P50431 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shmt1P50431 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Shmt1P50431 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shmt1P50431 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Shmt1P50431 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Shmt1P50431 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Shmt1P50431 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Shmt1P50431 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC21.18■□□□□ 0.98
Shmt1P50431 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Shmt1P50431 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Shmt1P50431 Flvcr1-202ENSMUST00000191946 1216 ntBASIC21.18■□□□□ 0.98
Shmt1P50431 Gm8493-201ENSMUST00000196881 489 ntBASIC21.18■□□□□ 0.98
Shmt1P50431 Gm43173-201ENSMUST00000202246 593 ntBASIC21.18■□□□□ 0.98
Shmt1P50431 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC21.18■□□□□ 0.98
Shmt1P50431 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Shmt1P50431 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Shmt1P50431 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Shmt1P50431 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Shmt1P50431 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Shmt1P50431 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Shmt1P50431 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC21.18■□□□□ 0.98
Shmt1P50431 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Shmt1P50431 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC21.17■□□□□ 0.98
Shmt1P50431 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Shmt1P50431 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Shmt1P50431 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC21.17■□□□□ 0.98
Shmt1P50431 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Shmt1P50431 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Shmt1P50431 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Shmt1P50431 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
Shmt1P50431 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Shmt1P50431 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Shmt1P50431 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Shmt1P50431 Gm43017-201ENSMUST00000198296 752 ntBASIC21.16■□□□□ 0.98
Shmt1P50431 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Shmt1P50431 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Shmt1P50431 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC21.16■□□□□ 0.98
Shmt1P50431 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC21.16■□□□□ 0.98
Shmt1P50431 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Shmt1P50431 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Shmt1P50431 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Shmt1P50431 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Shmt1P50431 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Shmt1P50431 Gm7160-202ENSMUST00000188519 1027 ntBASIC21.15■□□□□ 0.98
Shmt1P50431 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Shmt1P50431 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Shmt1P50431 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Shmt1P50431 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms