Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx3P48381 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx3P48381 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx3P48381 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
Rfx3P48381 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC18.02■□□□□ 0.48
Rfx3P48381 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC18.02■□□□□ 0.48
Rfx3P48381 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx3P48381 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Rfx3P48381 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
Rfx3P48381 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
Rfx3P48381 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx3P48381 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx3P48381 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Rfx3P48381 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Rfx3P48381 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx3P48381 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx3P48381 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Rfx3P48381 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx3P48381 Gm15820-201ENSMUST00000201566 728 ntBASIC18.01■□□□□ 0.47
Rfx3P48381 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx3P48381 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx3P48381 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx3P48381 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Rfx3P48381 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx3P48381 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
Rfx3P48381 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx3P48381 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Rfx3P48381 AC122428.2-201ENSMUST00000216321 1832 ntBASIC18■□□□□ 0.47
Rfx3P48381 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Rfx3P48381 Gm43545-201ENSMUST00000196765 2779 ntBASIC18■□□□□ 0.47
Rfx3P48381 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Rfx3P48381 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Rfx3P48381 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC18■□□□□ 0.47
Rfx3P48381 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Rfx3P48381 Gm40881-201ENSMUST00000223397 166 ntBASIC18■□□□□ 0.47
Rfx3P48381 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Rfx3P48381 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Rfx3P48381 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
Rfx3P48381 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Rfx3P48381 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Rfx3P48381 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18■□□□□ 0.47
Rfx3P48381 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Rfx3P48381 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC17.99■□□□□ 0.47
Rfx3P48381 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Rfx3P48381 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Rfx3P48381 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC17.99■□□□□ 0.47
Rfx3P48381 Gm42501-201ENSMUST00000200220 1026 ntBASIC17.99■□□□□ 0.47
Rfx3P48381 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC17.99■□□□□ 0.47
Rfx3P48381 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Rfx3P48381 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Rfx3P48381 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC17.99■□□□□ 0.47
Rfx3P48381 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC17.99■□□□□ 0.47
Rfx3P48381 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC17.98■□□□□ 0.47
Rfx3P48381 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Rfx3P48381 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Rfx3P48381 Gm5522-201ENSMUST00000189483 1242 ntBASIC17.98■□□□□ 0.47
Rfx3P48381 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Rfx3P48381 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Rfx3P48381 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Rfx3P48381 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC17.98■□□□□ 0.47
Rfx3P48381 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Rfx3P48381 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Rfx3P48381 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Rfx3P48381 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC17.97■□□□□ 0.47
Rfx3P48381 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx3P48381 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx3P48381 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
Rfx3P48381 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx3P48381 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx3P48381 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.97■□□□□ 0.47
Rfx3P48381 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx3P48381 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx3P48381 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx3P48381 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC17.96■□□□□ 0.47
Rfx3P48381 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx3P48381 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC17.96■□□□□ 0.47
Rfx3P48381 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Rfx3P48381 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx3P48381 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Rfx3P48381 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC17.96■□□□□ 0.47
Rfx3P48381 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx3P48381 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Rfx3P48381 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
Rfx3P48381 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx3P48381 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx3P48381 Gm15546-201ENSMUST00000122095 826 ntBASIC17.95■□□□□ 0.46
Rfx3P48381 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Rfx3P48381 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC17.95■□□□□ 0.46
Rfx3P48381 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx3P48381 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx3P48381 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx3P48381 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx3P48381 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC17.95■□□□□ 0.46
Rfx3P48381 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx3P48381 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx3P48381 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx3P48381 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx3P48381 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx3P48381 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx3P48381 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms