Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Usp4P35123 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.93■□□□□ 0.94
Usp4P35123 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
Usp4P35123 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp4P35123 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp4P35123 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Usp4P35123 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC20.93■□□□□ 0.94
Usp4P35123 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Usp4P35123 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp4P35123 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp4P35123 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp4P35123 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Usp4P35123 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp4P35123 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Usp4P35123 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usp4P35123 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.92■□□□□ 0.94
Usp4P35123 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp4P35123 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Usp4P35123 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp4P35123 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp4P35123 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp4P35123 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp4P35123 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.91■□□□□ 0.94
Usp4P35123 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp4P35123 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.9■□□□□ 0.94
Usp4P35123 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp4P35123 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp4P35123 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Usp4P35123 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp4P35123 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp4P35123 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp4P35123 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp4P35123 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp4P35123 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp4P35123 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.9■□□□□ 0.94
Usp4P35123 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Usp4P35123 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC20.9■□□□□ 0.94
Usp4P35123 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Usp4P35123 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp4P35123 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Usp4P35123 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.89■□□□□ 0.94
Usp4P35123 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Usp4P35123 Gm11847-201ENSMUST00000125165 1119 ntBASIC20.89■□□□□ 0.93
Usp4P35123 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp4P35123 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
Usp4P35123 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.89■□□□□ 0.93
Usp4P35123 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp4P35123 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp4P35123 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Usp4P35123 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Usp4P35123 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.88■□□□□ 0.93
Usp4P35123 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Usp4P35123 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Usp4P35123 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp4P35123 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.88■□□□□ 0.93
Usp4P35123 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp4P35123 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Usp4P35123 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp4P35123 Gm8093-201ENSMUST00000128935 1892 ntBASIC20.88■□□□□ 0.93
Usp4P35123 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp4P35123 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp4P35123 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
Usp4P35123 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp4P35123 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp4P35123 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Usp4P35123 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC20.87■□□□□ 0.93
Usp4P35123 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp4P35123 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp4P35123 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp4P35123 Gm16464-201ENSMUST00000117815 1095 ntBASIC20.86■□□□□ 0.93
Usp4P35123 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC20.86■□□□□ 0.93
Usp4P35123 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.86■□□□□ 0.93
Usp4P35123 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Usp4P35123 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp4P35123 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp4P35123 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp4P35123 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Usp4P35123 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
Usp4P35123 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Usp4P35123 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC20.85■□□□□ 0.93
Usp4P35123 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.85■□□□□ 0.93
Usp4P35123 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp4P35123 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC20.85■□□□□ 0.93
Usp4P35123 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp4P35123 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp4P35123 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp4P35123 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp4P35123 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp4P35123 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp4P35123 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Usp4P35123 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp4P35123 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Usp4P35123 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp4P35123 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp4P35123 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp4P35123 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Usp4P35123 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Usp4P35123 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.83■□□□□ 0.92
Usp4P35123 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usp4P35123 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 140.7 ms