Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Clk3O35492 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Clk3O35492 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Clk3O35492 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Clk3O35492 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Clk3O35492 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Clk3O35492 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Clk3O35492 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Clk3O35492 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Clk3O35492 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Clk3O35492 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC18.95■□□□□ 0.62
Clk3O35492 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Clk3O35492 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.95■□□□□ 0.62
Clk3O35492 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Clk3O35492 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Clk3O35492 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Clk3O35492 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Clk3O35492 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Clk3O35492 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Clk3O35492 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Clk3O35492 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Clk3O35492 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Clk3O35492 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC18.94■□□□□ 0.62
Clk3O35492 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Clk3O35492 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Clk3O35492 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Clk3O35492 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Clk3O35492 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Clk3O35492 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC18.94■□□□□ 0.62
Clk3O35492 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Clk3O35492 Gm9959-201ENSMUST00000068277 390 ntBASIC18.94■□□□□ 0.62
Clk3O35492 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Clk3O35492 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Clk3O35492 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Clk3O35492 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clk3O35492 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clk3O35492 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clk3O35492 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Clk3O35492 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clk3O35492 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Clk3O35492 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Clk3O35492 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Clk3O35492 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC18.92■□□□□ 0.62
Clk3O35492 Gm43545-201ENSMUST00000196765 2779 ntBASIC18.92■□□□□ 0.62
Clk3O35492 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC18.92■□□□□ 0.62
Clk3O35492 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Clk3O35492 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Clk3O35492 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Clk3O35492 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Clk3O35492 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Clk3O35492 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Clk3O35492 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Clk3O35492 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Clk3O35492 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
Clk3O35492 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.91■□□□□ 0.62
Clk3O35492 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Clk3O35492 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Clk3O35492 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clk3O35492 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clk3O35492 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Clk3O35492 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clk3O35492 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Clk3O35492 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC18.9■□□□□ 0.62
Clk3O35492 Gm45102-201ENSMUST00000207427 857 ntBASIC18.9■□□□□ 0.62
Clk3O35492 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clk3O35492 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clk3O35492 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clk3O35492 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clk3O35492 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clk3O35492 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clk3O35492 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clk3O35492 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Clk3O35492 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clk3O35492 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clk3O35492 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clk3O35492 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clk3O35492 AC122428.2-201ENSMUST00000216321 1832 ntBASIC18.89■□□□□ 0.61
Clk3O35492 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC18.89■□□□□ 0.61
Clk3O35492 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clk3O35492 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC18.89■□□□□ 0.61
Clk3O35492 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC18.89■□□□□ 0.61
Clk3O35492 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clk3O35492 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Clk3O35492 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clk3O35492 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clk3O35492 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clk3O35492 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clk3O35492 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clk3O35492 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clk3O35492 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clk3O35492 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clk3O35492 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clk3O35492 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clk3O35492 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clk3O35492 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Clk3O35492 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Clk3O35492 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clk3O35492 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Clk3O35492 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Clk3O35492 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms