Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Ube4aE9Q735 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
Ube4aE9Q735 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC24.29■■□□□ 1.48
Ube4aE9Q735 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Ube4aE9Q735 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ube4aE9Q735 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Ube4aE9Q735 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC24.28■■□□□ 1.48
Ube4aE9Q735 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC24.28■■□□□ 1.48
Ube4aE9Q735 Gm10033-202ENSMUST00000211874 928 ntBASIC24.28■■□□□ 1.48
Ube4aE9Q735 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
Ube4aE9Q735 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ube4aE9Q735 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Ube4aE9Q735 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Ube4aE9Q735 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Ube4aE9Q735 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
Ube4aE9Q735 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Ube4aE9Q735 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC24.27■■□□□ 1.48
Ube4aE9Q735 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Ube4aE9Q735 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Ube4aE9Q735 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
Ube4aE9Q735 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Ube4aE9Q735 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Ube4aE9Q735 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Ube4aE9Q735 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Ube4aE9Q735 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC24.26■■□□□ 1.47
Ube4aE9Q735 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC24.26■■□□□ 1.47
Ube4aE9Q735 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
Ube4aE9Q735 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Ube4aE9Q735 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Ube4aE9Q735 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
Ube4aE9Q735 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Ube4aE9Q735 Gm29257-201ENSMUST00000186115 639 ntBASIC24.25■■□□□ 1.47
Ube4aE9Q735 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Ube4aE9Q735 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC24.25■■□□□ 1.47
Ube4aE9Q735 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC24.25■■□□□ 1.47
Ube4aE9Q735 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ube4aE9Q735 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ube4aE9Q735 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Ube4aE9Q735 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC24.24■■□□□ 1.47
Ube4aE9Q735 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Ube4aE9Q735 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
Ube4aE9Q735 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
Ube4aE9Q735 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ube4aE9Q735 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
Ube4aE9Q735 Gm18671-201ENSMUST00000214826 683 ntBASIC24.23■■□□□ 1.47
Ube4aE9Q735 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
Ube4aE9Q735 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ube4aE9Q735 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ube4aE9Q735 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ube4aE9Q735 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
Ube4aE9Q735 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ube4aE9Q735 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ube4aE9Q735 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC24.22■■□□□ 1.47
Ube4aE9Q735 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ube4aE9Q735 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ube4aE9Q735 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ube4aE9Q735 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ube4aE9Q735 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Ube4aE9Q735 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC24.21■■□□□ 1.47
Ube4aE9Q735 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ube4aE9Q735 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ube4aE9Q735 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC24.21■■□□□ 1.47
Ube4aE9Q735 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Ube4aE9Q735 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Ube4aE9Q735 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ube4aE9Q735 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Ube4aE9Q735 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC24.2■■□□□ 1.46
Ube4aE9Q735 AV356131-201ENSMUST00000206201 750 ntBASIC24.2■■□□□ 1.46
Ube4aE9Q735 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC24.2■■□□□ 1.46
Ube4aE9Q735 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC24.2■■□□□ 1.46
Ube4aE9Q735 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Ube4aE9Q735 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Ube4aE9Q735 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Ube4aE9Q735 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Ube4aE9Q735 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Ube4aE9Q735 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC24.19■■□□□ 1.46
Ube4aE9Q735 Gm37179-201ENSMUST00000194862 823 ntBASIC24.19■■□□□ 1.46
Ube4aE9Q735 Gm42778-201ENSMUST00000199644 553 ntBASIC24.19■■□□□ 1.46
Ube4aE9Q735 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Ube4aE9Q735 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ube4aE9Q735 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ube4aE9Q735 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ube4aE9Q735 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC24.18■■□□□ 1.46
Ube4aE9Q735 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Ube4aE9Q735 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ube4aE9Q735 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ube4aE9Q735 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ube4aE9Q735 Gm14281-201ENSMUST00000121700 1294 ntBASIC24.18■■□□□ 1.46
Ube4aE9Q735 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ube4aE9Q735 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Ube4aE9Q735 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
Ube4aE9Q735 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
Ube4aE9Q735 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ube4aE9Q735 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Ube4aE9Q735 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Ube4aE9Q735 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ube4aE9Q735 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ube4aE9Q735 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Ube4aE9Q735 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ube4aE9Q735 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms