Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC17.94■□□□□ 0.46
Pcdhgb8A0A140LI48 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Pcdhgb8A0A140LI48 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Pcdhgb8A0A140LI48 AC116713.1-201ENSMUST00000215074 430 ntBASIC17.94■□□□□ 0.46
Pcdhgb8A0A140LI48 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC17.94■□□□□ 0.46
Pcdhgb8A0A140LI48 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Pcdhgb8A0A140LI48 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Pcdhgb8A0A140LI48 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdhgb8A0A140LI48 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Pcdhgb8A0A140LI48 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC17.93■□□□□ 0.46
Pcdhgb8A0A140LI48 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdhgb8A0A140LI48 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdhgb8A0A140LI48 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Pcdhgb8A0A140LI48 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC17.93■□□□□ 0.46
Pcdhgb8A0A140LI48 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdhgb8A0A140LI48 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdhgb8A0A140LI48 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdhgb8A0A140LI48 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdhgb8A0A140LI48 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC17.93■□□□□ 0.46
Pcdhgb8A0A140LI48 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdhgb8A0A140LI48 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Pcdhgb8A0A140LI48 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Pcdhgb8A0A140LI48 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Pcdhgb8A0A140LI48 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC17.92■□□□□ 0.46
Pcdhgb8A0A140LI48 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC17.92■□□□□ 0.46
Pcdhgb8A0A140LI48 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Pcdhgb8A0A140LI48 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Pcdhgb8A0A140LI48 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC17.92■□□□□ 0.46
Pcdhgb8A0A140LI48 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Pcdhgb8A0A140LI48 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Pcdhgb8A0A140LI48 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Pcdhgb8A0A140LI48 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC17.89■□□□□ 0.46
Pcdhgb8A0A140LI48 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdhgb8A0A140LI48 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdhgb8A0A140LI48 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
Pcdhgb8A0A140LI48 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdhgb8A0A140LI48 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC17.89■□□□□ 0.45
Pcdhgb8A0A140LI48 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC17.89■□□□□ 0.45
Pcdhgb8A0A140LI48 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdhgb8A0A140LI48 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdhgb8A0A140LI48 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdhgb8A0A140LI48 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdhgb8A0A140LI48 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdhgb8A0A140LI48 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Pcdhgb8A0A140LI48 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Pcdhgb8A0A140LI48 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC17.88■□□□□ 0.45
Pcdhgb8A0A140LI48 Gm22238-201ENSMUST00000175222 88 ntBASIC17.88■□□□□ 0.45
Pcdhgb8A0A140LI48 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Pcdhgb8A0A140LI48 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Pcdhgb8A0A140LI48 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Pcdhgb8A0A140LI48 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Pcdhgb8A0A140LI48 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Pcdhgb8A0A140LI48 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Pcdhgb8A0A140LI48 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Pcdhgb8A0A140LI48 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Pcdhgb8A0A140LI48 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Pcdhgb8A0A140LI48 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms