Protein–RNA interactions for Protein: A0A0G2JFX3

Trav13d-4, T cell receptor alpha variable 13D-4 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-4A0A0G2JFX3 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC13.77□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Trav13d-4A0A0G2JFX3 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC13.77□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC13.76□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC13.75□□□□□ -0.21
Trav13d-4A0A0G2JFX3 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Trav13d-4A0A0G2JFX3 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC13.75□□□□□ -0.21
Trav13d-4A0A0G2JFX3 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC13.75□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Gm37035-201ENSMUST00000194809 2148 ntBASIC13.75□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav13d-4A0A0G2JFX3 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms