Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm19798-201ENSMUST00000201502 457 ntBASIC12.61□□□□□ -0.39
Scn11aQ9R053 Letm2-206ENSMUST00000210234 837 ntTSL 5 BASIC12.61□□□□□ -0.39
Scn11aQ9R053 AC161581.1-201ENSMUST00000228696 318 ntBASIC12.61□□□□□ -0.39
Scn11aQ9R053 Ssna1-201ENSMUST00000028342 862 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Myl10-201ENSMUST00000005611 688 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 AC154186.1-201ENSMUST00000227711 1597 ntBASIC12.61□□□□□ -0.39
Scn11aQ9R053 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Fcrl1-206ENSMUST00000194786 1540 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Rxfp2-206ENSMUST00000201612 2470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Fam13c-203ENSMUST00000173042 3310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Igkv3-9-201ENSMUST00000103398 359 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Gm24981-201ENSMUST00000104459 132 ntBASIC12.61□□□□□ -0.39
Scn11aQ9R053 Gm15476-201ENSMUST00000118247 1191 ntBASIC12.61□□□□□ -0.39
Scn11aQ9R053 Gm20610-201ENSMUST00000176406 587 ntTSL 5 BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Gm3898-201ENSMUST00000180221 613 ntTSL 5 BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Gm44139-201ENSMUST00000204903 373 ntBASIC12.61□□□□□ -0.39
Scn11aQ9R053 Gm31786-201ENSMUST00000212305 564 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Gm34983-202ENSMUST00000220432 494 ntTSL 3 BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Klk13-201ENSMUST00000066834 1809 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Scn11aQ9R053 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Hnrnpc-210ENSMUST00000228232 2535 ntAPPRIS P5 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Spert-201ENSMUST00000035243 1430 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm30504-201ENSMUST00000209316 1688 ntTSL 5 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Lpo-201ENSMUST00000103177 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm7642-201ENSMUST00000216345 1809 ntBASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm8848-201ENSMUST00000197270 1343 ntBASIC12.6□□□□□ -0.39
Scn11aQ9R053 Spata17-201ENSMUST00000027908 1303 ntAPPRIS P3 TSL 2 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Armcx3-203ENSMUST00000086884 3488 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm7742-201ENSMUST00000167648 1527 ntBASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm7732-201ENSMUST00000170486 1527 ntBASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm7740-201ENSMUST00000186171 1527 ntBASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm7736-201ENSMUST00000096981 1527 ntBASIC12.6□□□□□ -0.39
Scn11aQ9R053 Rps6ka1-209ENSMUST00000174481 2228 ntTSL 5 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Olfr464-205ENSMUST00000217112 2232 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm14633-201ENSMUST00000121152 470 ntBASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm5501-201ENSMUST00000165917 832 ntBASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm26594-201ENSMUST00000180383 1094 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm4960-201ENSMUST00000182928 1001 ntBASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm37597-201ENSMUST00000191853 382 ntBASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm42133-201ENSMUST00000196076 637 ntTSL 3 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 AC156633.1-201ENSMUST00000215971 614 ntTSL 2 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm32296-201ENSMUST00000220590 1057 ntTSL 3 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm5194-201ENSMUST00000221457 742 ntBASIC12.6□□□□□ -0.39
Scn11aQ9R053 Scgb1c1-201ENSMUST00000035300 455 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm8618-201ENSMUST00000097570 432 ntBASIC12.6□□□□□ -0.39
Scn11aQ9R053 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC12.6□□□□□ -0.39
Scn11aQ9R053 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Trp63-207ENSMUST00000115308 2380 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Cers3-201ENSMUST00000066475 3250 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Fos-201ENSMUST00000021674 2108 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm6559-201ENSMUST00000204678 1694 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Tctn3-201ENSMUST00000025981 2743 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm3716-202ENSMUST00000198582 2879 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scn11aQ9R053 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scn11aQ9R053 Casp14-201ENSMUST00000005488 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scn11aQ9R053 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scn11aQ9R053 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Scn11aQ9R053 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scn11aQ9R053 Elovl7-201ENSMUST00000022207 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scn11aQ9R053 Gemin7-205ENSMUST00000122127 652 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
Scn11aQ9R053 Gm12927-201ENSMUST00000150252 373 ntTSL 2 BASIC12.59□□□□□ -0.39
Scn11aQ9R053 Gm1758-201ENSMUST00000164528 606 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Scn11aQ9R053 Gm26812-202ENSMUST00000181776 599 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Scn11aQ9R053 Nabp1-206ENSMUST00000188051 680 ntTSL 3 BASIC12.59□□□□□ -0.39
Scn11aQ9R053 6030460B20Rik-201ENSMUST00000191764 1058 ntBASIC12.59□□□□□ -0.39
Scn11aQ9R053 4930517L18Rik-201ENSMUST00000191880 482 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 119.5 ms