Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Shroom2-201ENSMUST00000062317 6997 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Gemin8-202ENSMUST00000087169 1928 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Kdelc1-201ENSMUST00000027213 1765 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 C230021G24Rik-201ENSMUST00000181196 3679 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Epn2-203ENSMUST00000108712 4458 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Avil-201ENSMUST00000026500 3033 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Gm6024-201ENSMUST00000117850 1558 ntBASIC11.13□□□□□ -0.63
Trim60Q8VI40 Gm25076-201ENSMUST00000104098 132 ntBASIC11.13□□□□□ -0.63
Trim60Q8VI40 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Gm12663-201ENSMUST00000118481 958 ntBASIC11.13□□□□□ -0.63
Trim60Q8VI40 Gm15573-201ENSMUST00000119487 540 ntBASIC11.13□□□□□ -0.63
Trim60Q8VI40 Gm12337-201ENSMUST00000119634 400 ntBASIC11.13□□□□□ -0.63
Trim60Q8VI40 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC11.13□□□□□ -0.63
Trim60Q8VI40 Scgb2b25-ps-201ENSMUST00000121936 307 ntBASIC11.13□□□□□ -0.63
Trim60Q8VI40 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Fyn-205ENSMUST00000135242 2114 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC11.13□□□□□ -0.63
Trim60Q8VI40 0610040B10Rik-202ENSMUST00000162890 600 ntTSL 5 BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Gm15832-201ENSMUST00000146314 1832 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Tti2-201ENSMUST00000098842 5039 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC11.13□□□□□ -0.63
Trim60Q8VI40 Srrm4-202ENSMUST00000139425 2798 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Aldoa-202ENSMUST00000087566 1549 ntTSL 5 BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Nln-205ENSMUST00000224945 2486 ntBASIC11.13□□□□□ -0.63
Trim60Q8VI40 Als2-201ENSMUST00000027178 6342 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Prkx-201ENSMUST00000036333 4146 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Epb41-202ENSMUST00000054917 4948 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Olfr707-204ENSMUST00000213251 1777 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Fcrl1-202ENSMUST00000163661 1649 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Gpr19-201ENSMUST00000046255 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim60Q8VI40 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Atxn2l-206ENSMUST00000206577 3894 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Trpc6-202ENSMUST00000214596 2913 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 AC242690.1-202ENSMUST00000214616 1742 ntTSL 5 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Adgra1-201ENSMUST00000026548 4758 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Ptpn21-201ENSMUST00000085116 5696 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Gpatch2-204ENSMUST00000110943 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Setbp1-201ENSMUST00000025430 9953 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Rrm2b-201ENSMUST00000022901 4561 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Pmp22-201ENSMUST00000018361 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Nucks1-201ENSMUST00000062264 5998 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Wbp1l-202ENSMUST00000111855 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Gm32742-201ENSMUST00000210433 8516 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Stat5a-202ENSMUST00000107356 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC11.12□□□□□ -0.63
Trim60Q8VI40 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC11.12□□□□□ -0.63
Trim60Q8VI40 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 4930471C04Rik-201ENSMUST00000166038 865 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Gm44155-201ENSMUST00000203923 412 ntBASIC11.12□□□□□ -0.63
Trim60Q8VI40 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Gm8162-201ENSMUST00000213951 665 ntBASIC11.12□□□□□ -0.63
Trim60Q8VI40 AC159196.1-201ENSMUST00000225524 377 ntBASIC11.12□□□□□ -0.63
Trim60Q8VI40 AC154276.3-201ENSMUST00000227643 998 ntBASIC11.12□□□□□ -0.63
Trim60Q8VI40 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Pvalb-201ENSMUST00000005860 977 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Hist1h2bl-201ENSMUST00000091756 381 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Gm20796-201ENSMUST00000180355 5838 ntBASIC11.12□□□□□ -0.63
Trim60Q8VI40 AC156631.1-201ENSMUST00000215213 1358 ntTSL 5 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Khnyn-201ENSMUST00000022831 3898 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Rassf2-201ENSMUST00000028814 8233 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Vmn1r16-203ENSMUST00000228356 3492 ntAPPRIS ALT2 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Acadsb-202ENSMUST00000117518 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Zfp423-203ENSMUST00000165770 4334 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Gm30648-202ENSMUST00000200648 1957 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 March10-201ENSMUST00000049995 3074 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Oscp1-203ENSMUST00000143712 1473 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Ctnnd1-223ENSMUST00000111697 5294 ntTSL 5 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Gpsm1-201ENSMUST00000066889 3432 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Clasp1-208ENSMUST00000187713 5367 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Bicd1-203ENSMUST00000111513 4049 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Scml4-201ENSMUST00000063063 4885 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Aplp2-202ENSMUST00000079758 3504 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trim60Q8VI40 Zfp830-201ENSMUST00000056677 1591 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Trim60Q8VI40 Smpd4-218ENSMUST00000170273 2166 ntTSL 5 BASIC11.11□□□□□ -0.63
Trim60Q8VI40 Baat-201ENSMUST00000043056 1941 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim60Q8VI40 Plekha7-201ENSMUST00000084664 4312 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim60Q8VI40 Cage1-203ENSMUST00000110233 2875 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Trim60Q8VI40 Kcnn3-201ENSMUST00000000811 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim60Q8VI40 Col4a4-201ENSMUST00000087050 10108 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim60Q8VI40 Colec11-201ENSMUST00000036136 1423 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim60Q8VI40 Lct-201ENSMUST00000073490 6174 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
Trim60Q8VI40 Gtf2ird1-204ENSMUST00000100652 3693 ntAPPRIS P4 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim60Q8VI40 Trim65-202ENSMUST00000106440 4040 ntTSL 5 BASIC11.11□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms