Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Pex3-207ENSMUST00000170376 1381 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Atf3-203ENSMUST00000195117 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 AC154197.1-201ENSMUST00000225136 1382 ntBASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Kcne3-202ENSMUST00000170954 1315 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm45677-201ENSMUST00000209975 1341 ntBASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Scaf1-206ENSMUST00000211735 4209 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Ccr6-202ENSMUST00000164411 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm8050-201ENSMUST00000171987 1595 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Lig3-210ENSMUST00000173347 3631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Skint7-202ENSMUST00000106568 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Tmem91-203ENSMUST00000108405 550 ntTSL 3 BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm13171-201ENSMUST00000117233 391 ntBASIC14.74□□□□□ -0.05
Usp40Q8BWR4 3110039M20Rik-201ENSMUST00000127041 868 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm12916-201ENSMUST00000139012 948 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm13965-201ENSMUST00000154834 576 ntTSL 3 BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gng2-203ENSMUST00000159073 960 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm5335-201ENSMUST00000182995 1000 ntBASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm4430-202ENSMUST00000193902 1041 ntBASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm37944-201ENSMUST00000194233 414 ntBASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm37362-201ENSMUST00000194567 634 ntTSL 5 BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm37885-202ENSMUST00000195868 685 ntTSL 3 BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm42859-201ENSMUST00000199572 193 ntBASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm20186-201ENSMUST00000201775 737 ntTSL 3 BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm44196-203ENSMUST00000204359 1190 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm35611-201ENSMUST00000205323 799 ntTSL 3 BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Cklf-210ENSMUST00000212939 737 ntAPPRIS ALT2 TSL 3 BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Madcam1-202ENSMUST00000217748 944 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 1700047G03Rik-205ENSMUST00000227822 1048 ntBASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Ensa-202ENSMUST00000058230 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Ifnl3-201ENSMUST00000078364 582 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Cutal-203ENSMUST00000113068 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm38055-201ENSMUST00000195353 2217 ntBASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Pigq-219ENSMUST00000208071 2926 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Aqr-202ENSMUST00000102543 4352 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm46355-201ENSMUST00000221434 1671 ntTSL 5 BASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Gm43052-201ENSMUST00000201451 1628 ntBASIC14.74□□□□□ -0.05
Usp40Q8BWR4 Cpt1c-201ENSMUST00000063761 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Gm4865-201ENSMUST00000196284 1309 ntBASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 AC131081.1-201ENSMUST00000219535 1736 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Ighv1-74-201ENSMUST00000103543 348 ntAPPRIS ALT2 BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Ppt1-204ENSMUST00000121870 986 ntTSL 2 BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Gm15341-201ENSMUST00000137315 592 ntTSL 3 BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 St8sia3os-204ENSMUST00000140903 383 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Bud31-203ENSMUST00000160075 928 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Gm26943-201ENSMUST00000182295 957 ntBASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Gm4960-201ENSMUST00000182928 1001 ntBASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Gm7985-201ENSMUST00000183329 981 ntBASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Gm27444-201ENSMUST00000184157 137 ntBASIC14.73□□□□□ -0.05
Usp40Q8BWR4 1500015A07Rik-202ENSMUST00000184530 423 ntTSL 3 BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Gm37301-201ENSMUST00000195412 568 ntBASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Gm42493-201ENSMUST00000197559 1121 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Fkbp6-202ENSMUST00000201534 1287 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Gm5881-201ENSMUST00000204737 367 ntBASIC14.73□□□□□ -0.05
Usp40Q8BWR4 AC140381.2-201ENSMUST00000217935 1260 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 AC153379.1-201ENSMUST00000218174 485 ntTSL 3 BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 AC140314.1-201ENSMUST00000219549 554 ntBASIC14.73□□□□□ -0.05
Usp40Q8BWR4 AC102523.1-201ENSMUST00000228706 1144 ntBASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Krtap3-2-201ENSMUST00000092699 1031 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Gm9035-201ENSMUST00000218318 1697 ntBASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 AC166361.2-201ENSMUST00000219269 1415 ntBASIC14.73□□□□□ -0.05
Usp40Q8BWR4 AC154640.1-203ENSMUST00000228316 1618 ntBASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Unkl-201ENSMUST00000015271 3414 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Lcorl-205ENSMUST00000121573 2378 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Scmh1-203ENSMUST00000106298 1995 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Gp2-201ENSMUST00000033255 1993 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Nrf1-201ENSMUST00000004761 1589 ntTSL 5 BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Usp40Q8BWR4 Megf11-202ENSMUST00000093829 3652 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Usp40Q8BWR4 Eif4e1b-201ENSMUST00000110003 2131 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
Usp40Q8BWR4 Epx-201ENSMUST00000049768 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Usp40Q8BWR4 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Usp40Q8BWR4 Gm43963-201ENSMUST00000203466 2488 ntBASIC14.72□□□□□ -0.05
Usp40Q8BWR4 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms