Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Tpp2-201ENSMUST00000087933 4649 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Fam78b-202ENSMUST00000126198 2951 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Zfp14-201ENSMUST00000077787 1506 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC11.41□□□□□ -0.58
Shmt1P50431 Itgal-205ENSMUST00000170971 3662 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Shmt1P50431 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Hsd3b1-202ENSMUST00000107016 1855 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Kyat1-201ENSMUST00000044038 1876 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC11.41□□□□□ -0.58
Shmt1P50431 Gm11919-201ENSMUST00000117609 721 ntBASIC11.41□□□□□ -0.58
Shmt1P50431 Olfr29-ps1-201ENSMUST00000117959 963 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Shmt1P50431 Gm11354-201ENSMUST00000121974 422 ntBASIC11.41□□□□□ -0.58
Shmt1P50431 Gm45716-201ENSMUST00000124877 1256 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Txnrd2-205ENSMUST00000126778 491 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Gm14091-201ENSMUST00000133534 874 ntTSL 2 BASIC11.41□□□□□ -0.58
Shmt1P50431 Aamdc-206ENSMUST00000136757 789 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
Shmt1P50431 Gm12426-201ENSMUST00000153083 371 ntTSL 5 BASIC11.41□□□□□ -0.58
Shmt1P50431 Gm16547-201ENSMUST00000159474 293 ntBASIC11.41□□□□□ -0.58
Shmt1P50431 Olfr527-201ENSMUST00000172230 978 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Shmt1P50431 Gm20414-201ENSMUST00000172918 646 ntBASIC11.41□□□□□ -0.58
Shmt1P50431 Scgb2b27-203ENSMUST00000185399 702 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.58
Shmt1P50431 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Bcap31-201ENSMUST00000002091 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Mustn1-201ENSMUST00000040715 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Sept4-202ENSMUST00000063156 1245 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Shmt1P50431 Shc1-210ENSMUST00000191485 3154 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Myc-206ENSMUST00000167731 1821 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 March1-207ENSMUST00000110258 2581 ntAPPRIS ALT1 TSL 5 BASIC11.41□□□□□ -0.58
Shmt1P50431 4930432K21Rik-202ENSMUST00000118856 2366 ntAPPRIS P4 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Gm15965-201ENSMUST00000123318 1428 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Tube1-201ENSMUST00000019991 2929 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Stx17-203ENSMUST00000107721 1771 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Gad1-ps-201ENSMUST00000167243 1776 ntBASIC11.41□□□□□ -0.58
Shmt1P50431 Gm5532-201ENSMUST00000097531 1751 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Fdft1-201ENSMUST00000054963 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Shmt1P50431 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Ablim2-204ENSMUST00000114204 2953 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Shmt1P50431 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Gm42463-201ENSMUST00000198041 4886 ntBASIC11.4□□□□□ -0.58
Shmt1P50431 Gm42521-201ENSMUST00000199190 2040 ntBASIC11.4□□□□□ -0.58
Shmt1P50431 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Synpr-201ENSMUST00000070323 2541 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Shmt1P50431 Colq-201ENSMUST00000112027 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC11.4□□□□□ -0.58
Shmt1P50431 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Gm16518-201ENSMUST00000117960 508 ntBASIC11.4□□□□□ -0.58
Shmt1P50431 Gm15031-201ENSMUST00000121341 210 ntBASIC11.4□□□□□ -0.58
Shmt1P50431 Gm12950-201ENSMUST00000121683 417 ntBASIC11.4□□□□□ -0.58
Shmt1P50431 Kdm6bos-201ENSMUST00000129924 840 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC11.4□□□□□ -0.58
Shmt1P50431 E030018B13Rik-201ENSMUST00000177638 1015 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Gm26272-201ENSMUST00000179241 132 ntBASIC11.4□□□□□ -0.58
Shmt1P50431 Gm5267-201ENSMUST00000191574 1045 ntBASIC11.4□□□□□ -0.58
Shmt1P50431 Gm37301-201ENSMUST00000195412 568 ntBASIC11.4□□□□□ -0.58
Shmt1P50431 Gm6352-201ENSMUST00000203583 1134 ntBASIC11.4□□□□□ -0.58
Shmt1P50431 4930486N12Rik-201ENSMUST00000206668 632 ntBASIC11.4□□□□□ -0.58
Shmt1P50431 Fcer2a-206ENSMUST00000208438 930 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Fcer2a-208ENSMUST00000208603 930 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 AC163703.1-201ENSMUST00000214133 339 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
Shmt1P50431 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Shmt1P50431 AC140375.1-201ENSMUST00000225421 694 ntBASIC11.4□□□□□ -0.58
Shmt1P50431 Tasp1-202ENSMUST00000099304 2127 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Shmt1P50431 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Gm12829-201ENSMUST00000146346 2434 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Gm37660-201ENSMUST00000192754 1732 ntBASIC11.4□□□□□ -0.58
Shmt1P50431 9530026P05Rik-204ENSMUST00000204449 1740 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Srsf6-203ENSMUST00000130411 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Shmt1P50431 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC11.4□□□□□ -0.59
Shmt1P50431 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Shmt1P50431 Skp2-201ENSMUST00000096482 3118 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Shmt1P50431 Jmjd4-202ENSMUST00000108777 4351 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Shmt1P50431 Spns3-201ENSMUST00000021154 1804 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Shmt1P50431 Slc9a3-203ENSMUST00000221703 5118 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Shmt1P50431 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
Shmt1P50431 Carns1-201ENSMUST00000167055 3968 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Shmt1P50431 Gpr37-202ENSMUST00000200812 3035 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Shmt1P50431 Optc-205ENSMUST00000153617 1615 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Shmt1P50431 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Shmt1P50431 Slc13a5-206ENSMUST00000208912 1751 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Shmt1P50431 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Shmt1P50431 Gm11571-201ENSMUST00000136820 2396 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Shmt1P50431 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Shmt1P50431 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Shmt1P50431 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Shmt1P50431 Gm14274-201ENSMUST00000117182 615 ntBASIC11.39□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms