Protein–RNA interactions for Protein: Q9JKX8

Upk3a, Uroplakin-3a, mousemouse

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upk3aQ9JKX8 Gm43249-201ENSMUST00000200464 458 ntBASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Gm43811-201ENSMUST00000202862 695 ntBASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Gm4903-201ENSMUST00000210462 405 ntBASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Gm45670-201ENSMUST00000211382 711 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Chordc1-202ENSMUST00000213605 519 ntTSL 2 BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 AI463170-202ENSMUST00000218453 558 ntTSL 2 BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 CT009713.2-201ENSMUST00000225532 1149 ntBASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 AC140293.1-201ENSMUST00000225626 1247 ntBASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Tspo2-201ENSMUST00000024794 956 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Ttc24-202ENSMUST00000064550 671 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Immt-205ENSMUST00000166938 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Rtn4ip1-202ENSMUST00000105492 2059 ntTSL 3 BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Gpr143-201ENSMUST00000026383 1586 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Rps6ka6-204ENSMUST00000113428 4135 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Fam78b-202ENSMUST00000126198 2951 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Gm32856-201ENSMUST00000212145 3767 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 C4a-207ENSMUST00000160679 5371 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Skp2-201ENSMUST00000096482 3118 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Cap2-202ENSMUST00000119341 2454 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Upk3aQ9JKX8 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 C130026L21Rik-204ENSMUST00000199587 1838 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Pdcl-202ENSMUST00000112940 3056 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Ralgps1-202ENSMUST00000091039 2738 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Btc-201ENSMUST00000121044 2876 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Tmem88b-201ENSMUST00000097742 3471 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Stx17-203ENSMUST00000107721 1771 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Ighv1-12-201ENSMUST00000103500 294 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Pax6-206ENSMUST00000111086 2601 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Mpp1-202ENSMUST00000114091 1558 ntTSL 2 BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Gm11544-201ENSMUST00000120215 382 ntBASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Rab7b-205ENSMUST00000136247 497 ntTSL 5 BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 1700123M08Rik-202ENSMUST00000146154 770 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Gm8194-201ENSMUST00000159783 859 ntBASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Olfr527-201ENSMUST00000172230 978 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Prm2-202ENSMUST00000189593 674 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Gm37368-201ENSMUST00000193173 3212 ntBASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Gm42780-201ENSMUST00000197083 734 ntBASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Gm5881-201ENSMUST00000204737 367 ntBASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Pex13-201ENSMUST00000020523 4146 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Lsm3-205ENSMUST00000206947 618 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Gm45120-201ENSMUST00000208880 408 ntBASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 AC154572.1-201ENSMUST00000226098 1204 ntBASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 2310057N15Rik-201ENSMUST00000054223 1028 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Tceanc-202ENSMUST00000112188 4050 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Gm16429-202ENSMUST00000201400 1848 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Gm7971-201ENSMUST00000086950 1848 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Gtf3c6-206ENSMUST00000217537 2526 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Ptpn23-201ENSMUST00000040021 5346 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Upk3aQ9JKX8 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Gm35021-201ENSMUST00000210105 2329 ntTSL 5 BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Arhgap4-202ENSMUST00000114404 2895 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Ikbkb-201ENSMUST00000033939 3580 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Rpe65-202ENSMUST00000196999 1863 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Gm37580-201ENSMUST00000192408 2800 ntBASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Calu-201ENSMUST00000031779 3229 ntAPPRIS P5 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Hectd2os-203ENSMUST00000142067 2662 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 4932438H23Rik-201ENSMUST00000035689 2684 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Gtf3c2-201ENSMUST00000088010 4552 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Gtf2ird1-206ENSMUST00000111244 3461 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Uaca-202ENSMUST00000214354 4417 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Lrrc57-201ENSMUST00000102496 1848 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Celf2-224ENSMUST00000182879 2223 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Snw1-201ENSMUST00000021428 2232 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Arhgap33-204ENSMUST00000207860 4396 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Dmrtc1b-201ENSMUST00000101324 1200 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Gm3409-202ENSMUST00000110599 1154 ntAPPRIS P2 TSL 5 BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Ccdc32-203ENSMUST00000110834 828 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Dmrtc1b-202ENSMUST00000113609 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Gm11980-201ENSMUST00000121445 986 ntBASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Gm16288-201ENSMUST00000137940 367 ntBASIC10.36□□□□□ -0.75
Upk3aQ9JKX8 Fam229b-208ENSMUST00000139743 679 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms