Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 A930003O13Rik-202ENSMUST00000197486 3098 ntBASIC16.36■□□□□ 0.21
Cux1P53564 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
Cux1P53564 Msln-201ENSMUST00000075884 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 D030068K23Rik-203ENSMUST00000181098 1399 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Nos1ap-203ENSMUST00000160466 1533 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
Cux1P53564 Serpina3g-201ENSMUST00000043315 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Spats2l-211ENSMUST00000169772 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Gm43375-201ENSMUST00000196705 2480 ntBASIC16.35■□□□□ 0.21
Cux1P53564 Igkv3-9-201ENSMUST00000103398 359 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Cux1P53564 Gm25723-201ENSMUST00000104530 126 ntBASIC16.35■□□□□ 0.21
Cux1P53564 Gm15032-201ENSMUST00000118547 411 ntBASIC16.35■□□□□ 0.21
Cux1P53564 Gm11800-201ENSMUST00000120050 579 ntBASIC16.35■□□□□ 0.21
Cux1P53564 1700010K24Rik-201ENSMUST00000125852 226 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Gm11608-202ENSMUST00000153049 877 ntTSL 3 BASIC16.35■□□□□ 0.21
Cux1P53564 Gm11915-201ENSMUST00000153669 358 ntTSL 5 BASIC16.35■□□□□ 0.21
Cux1P53564 Gm3687-201ENSMUST00000161710 460 ntBASIC16.35■□□□□ 0.21
Cux1P53564 Gm4868-201ENSMUST00000164138 789 ntBASIC16.35■□□□□ 0.21
Cux1P53564 Ptma-202ENSMUST00000186255 768 ntTSL 2 BASIC16.35■□□□□ 0.21
Cux1P53564 Gm37016-201ENSMUST00000195507 660 ntTSL 5 BASIC16.35■□□□□ 0.21
Cux1P53564 Gm31374-201ENSMUST00000213885 619 ntTSL 5 BASIC16.35■□□□□ 0.21
Cux1P53564 AC154433.1-201ENSMUST00000224401 1183 ntBASIC16.35■□□□□ 0.21
Cux1P53564 AC166061.1-201ENSMUST00000225163 1138 ntBASIC16.35■□□□□ 0.21
Cux1P53564 Vmn1r199-201ENSMUST00000091732 1104 ntAPPRIS P2 BASIC16.35■□□□□ 0.21
Cux1P53564 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
Cux1P53564 Gm16499-201ENSMUST00000204648 2065 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 H2-M10.3-201ENSMUST00000073546 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Cux1P53564 A330033J07Rik-201ENSMUST00000180921 2816 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC16.35■□□□□ 0.21
Cux1P53564 Med24-202ENSMUST00000100500 3133 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Cux1P53564 Gm45041-201ENSMUST00000207366 3108 ntBASIC16.35■□□□□ 0.21
Cux1P53564 Gm10646-201ENSMUST00000213227 3293 ntTSL 2 BASIC16.35■□□□□ 0.21
Cux1P53564 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC16.35■□□□□ 0.21
Cux1P53564 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Cux1P53564 Gm10406-201ENSMUST00000100895 1813 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Cux1P53564 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Mdh1-201ENSMUST00000102874 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Uros-204ENSMUST00000106146 1483 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Cux1P53564 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Cd55-201ENSMUST00000027650 2533 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Nr4a2-201ENSMUST00000028166 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Rpain-202ENSMUST00000108529 282 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Cux1P53564 Gm26379-201ENSMUST00000178125 138 ntBASIC16.35■□□□□ 0.21
Cux1P53564 Rian-208ENSMUST00000182370 352 ntTSL 3 BASIC16.35■□□□□ 0.21
Cux1P53564 Mir8104-201ENSMUST00000185165 101 ntBASIC16.35■□□□□ 0.21
Cux1P53564 Gm26901-202ENSMUST00000193106 256 ntTSL 3 BASIC16.35■□□□□ 0.21
Cux1P53564 Gm18894-201ENSMUST00000198794 694 ntBASIC16.35■□□□□ 0.21
Cux1P53564 Cfap54-201ENSMUST00000020200 2473 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Cux1P53564 Gm43450-201ENSMUST00000202611 632 ntTSL 3 BASIC16.35■□□□□ 0.21
Cux1P53564 Gm5650-201ENSMUST00000209641 598 ntBASIC16.35■□□□□ 0.21
Cux1P53564 Gm18119-201ENSMUST00000219972 616 ntBASIC16.35■□□□□ 0.21
Cux1P53564 Hesx1-202ENSMUST00000224331 983 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Cux1P53564 Scgb1c1-201ENSMUST00000035300 455 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
Cux1P53564 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Tstd2-202ENSMUST00000107772 3726 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Acp1-202ENSMUST00000074038 2754 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC16.34■□□□□ 0.21
Cux1P53564 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 C8b-202ENSMUST00000065072 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Gp2-201ENSMUST00000033255 1993 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Fhl1-206ENSMUST00000116596 1203 ntTSL 5 BASIC16.34■□□□□ 0.21
Cux1P53564 1700112J05Rik-201ENSMUST00000129353 793 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Gm12927-201ENSMUST00000150252 373 ntTSL 2 BASIC16.34■□□□□ 0.21
Cux1P53564 Gm23521-201ENSMUST00000177845 110 ntBASIC16.34■□□□□ 0.21
Cux1P53564 Mir6360-201ENSMUST00000184278 126 ntBASIC16.34■□□□□ 0.21
Cux1P53564 Gm35299-201ENSMUST00000195865 421 ntTSL 3 BASIC16.34■□□□□ 0.21
Cux1P53564 Gm6370-202ENSMUST00000198912 1017 ntAPPRIS ALT2 TSL 3 BASIC16.34■□□□□ 0.21
Cux1P53564 Gm8268-201ENSMUST00000209683 458 ntBASIC16.34■□□□□ 0.21
Cux1P53564 CT025547.1-201ENSMUST00000225127 578 ntBASIC16.34■□□□□ 0.21
Cux1P53564 Olfr1349-201ENSMUST00000051982 1054 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Cux1P53564 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Gm9864-201ENSMUST00000090043 1656 ntBASIC16.34■□□□□ 0.21
Cux1P53564 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Cux1P53564 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cux1P53564 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cux1P53564 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cux1P53564 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cux1P53564 Gm20773-202ENSMUST00000193306 1341 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Cux1P53564 Gm42651-201ENSMUST00000199851 1339 ntBASIC16.33■□□□□ 0.2
Cux1P53564 C130026L21Rik-204ENSMUST00000199587 1838 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms