Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Hint1-202ENSMUST00000117710 580 ntTSL 2 BASIC12.86□□□□□ -0.35
Rfx1P48377 Gm9133-201ENSMUST00000118289 540 ntBASIC12.86□□□□□ -0.35
Rfx1P48377 Gm12986-201ENSMUST00000119037 967 ntBASIC12.86□□□□□ -0.35
Rfx1P48377 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Rfx1P48377 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC12.86□□□□□ -0.35
Rfx1P48377 Gm2260-201ENSMUST00000184965 657 ntBASIC12.86□□□□□ -0.35
Rfx1P48377 Gm28450-201ENSMUST00000187349 638 ntBASIC12.86□□□□□ -0.35
Rfx1P48377 Gm37436-201ENSMUST00000193842 1085 ntBASIC12.86□□□□□ -0.35
Rfx1P48377 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC12.86□□□□□ -0.35
Rfx1P48377 Gm43852-201ENSMUST00000202098 917 ntBASIC12.86□□□□□ -0.35
Rfx1P48377 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Rfx1P48377 Gm6905-201ENSMUST00000205729 511 ntBASIC12.86□□□□□ -0.35
Rfx1P48377 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Rfx1P48377 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC12.86□□□□□ -0.35
Rfx1P48377 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Rfx1P48377 Scgb2b2-201ENSMUST00000038835 520 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Rfx1P48377 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Rfx1P48377 Carmil2-203ENSMUST00000213019 4194 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Rfx1P48377 Prim2-201ENSMUST00000027312 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Rfx1P48377 Zfp658-201ENSMUST00000005597 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Rfx1P48377 Slc6a2-201ENSMUST00000072939 6187 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Rfx1P48377 Zbtb8b-201ENSMUST00000053042 3288 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Rfx1P48377 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Rfx1P48377 Git2-203ENSMUST00000112183 4886 ntTSL 5 BASIC12.86□□□□□ -0.35
Rfx1P48377 Gm40377-201ENSMUST00000204604 2015 ntBASIC12.86□□□□□ -0.35
Rfx1P48377 Tia1-201ENSMUST00000095752 3130 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
Rfx1P48377 Adra1a-202ENSMUST00000159068 4282 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
Rfx1P48377 Cdc20b-204ENSMUST00000181568 1494 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Rfx1P48377 Lhx9-201ENSMUST00000019374 4937 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Adamts9-201ENSMUST00000113438 8016 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Rfx1P48377 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Gtf2ird1-206ENSMUST00000111244 3461 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Nek4-207ENSMUST00000228328 4245 ntAPPRIS P2 BASIC12.85□□□□□ -0.35
Rfx1P48377 Cfap53-201ENSMUST00000114895 1888 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Kcnv1-201ENSMUST00000022967 4389 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Gpr19-201ENSMUST00000046255 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Setmar-201ENSMUST00000049246 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Arfgap3-201ENSMUST00000067215 2619 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Supt16-201ENSMUST00000046709 4673 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Rfx1P48377 Gm12106-201ENSMUST00000116006 1200 ntBASIC12.85□□□□□ -0.35
Rfx1P48377 Gm14395-201ENSMUST00000120494 563 ntBASIC12.85□□□□□ -0.35
Rfx1P48377 4930571N24Rik-202ENSMUST00000142914 598 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC12.85□□□□□ -0.35
Rfx1P48377 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Snord55-201ENSMUST00000174939 79 ntBASIC12.85□□□□□ -0.35
Rfx1P48377 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC12.85□□□□□ -0.35
Rfx1P48377 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Rfx1P48377 Gm44323-201ENSMUST00000198689 129 ntBASIC12.85□□□□□ -0.35
Rfx1P48377 B230112I24Rik-201ENSMUST00000203953 1229 ntBASIC12.85□□□□□ -0.35
Rfx1P48377 Gm7395-201ENSMUST00000216059 1045 ntBASIC12.85□□□□□ -0.35
Rfx1P48377 AC154589.2-201ENSMUST00000228847 251 ntBASIC12.85□□□□□ -0.35
Rfx1P48377 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Rfx1P48377 Gm45828-201ENSMUST00000206938 1836 ntBASIC12.85□□□□□ -0.35
Rfx1P48377 4931423N10Rik-201ENSMUST00000028113 1842 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Hist4h4-201ENSMUST00000179285 2863 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Rfx1P48377 Sncaip-203ENSMUST00000163742 3272 ntAPPRIS P3 TSL 5 BASIC12.85□□□□□ -0.35
Rfx1P48377 Kif22-ps-201ENSMUST00000119302 1984 ntBASIC12.85□□□□□ -0.35
Rfx1P48377 Olfr1121-202ENSMUST00000213792 1996 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Rfx1P48377 Ezr-201ENSMUST00000064234 3164 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Gm11685-201ENSMUST00000141559 1332 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 9530026P05Rik-204ENSMUST00000204449 1740 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Slc10a1-202ENSMUST00000218162 1749 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Dclk1-213ENSMUST00000199702 2922 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Plekhg5-201ENSMUST00000084115 4113 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
Rfx1P48377 Pip5k1a-201ENSMUST00000005768 3480 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Rfx1P48377 Dclre1b-203ENSMUST00000106832 2299 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Iqce-201ENSMUST00000041783 6037 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rfx1P48377 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx1P48377 Dlec1-208ENSMUST00000165231 5263 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
Rfx1P48377 Gm43274-201ENSMUST00000202545 5000 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Pdzd7-202ENSMUST00000145391 4088 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Rfx1P48377 4932442E05Rik-201ENSMUST00000191892 2717 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Epn2-204ENSMUST00000108713 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx1P48377 5430434F05Rik-201ENSMUST00000206080 3553 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Slc1a2-204ENSMUST00000111213 2093 ntTSL 5 BASIC12.84□□□□□ -0.35
Rfx1P48377 AC090962.2-201ENSMUST00000225064 1801 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Kcnma1-207ENSMUST00000172099 3354 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Rfx1P48377 Gm37516-201ENSMUST00000192593 1954 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Mir680-2-201ENSMUST00000102163 110 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Gm23251-201ENSMUST00000103773 110 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Gm12337-201ENSMUST00000119634 400 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Gm6506-201ENSMUST00000119775 1136 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Gm12136-201ENSMUST00000120460 1209 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC12.84□□□□□ -0.35
Rfx1P48377 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC12.84□□□□□ -0.35
Rfx1P48377 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Rfx1P48377 Gm30946-201ENSMUST00000198288 724 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Gm40332-201ENSMUST00000199847 938 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Gm43458-201ENSMUST00000200791 462 ntTSL 3 BASIC12.84□□□□□ -0.35
Rfx1P48377 Gm44270-201ENSMUST00000203084 1234 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Gm1821-202ENSMUST00000227415 750 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Stra6-201ENSMUST00000034880 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx1P48377 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Rfx1P48377 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx1P48377 Xirp1-201ENSMUST00000111635 5839 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx1P48377 Smco1-201ENSMUST00000093183 1408 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Rfx1P48377 Tank-203ENSMUST00000112495 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx1P48377 Ints6l-201ENSMUST00000039374 3766 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms