Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm26631-201ENSMUST00000181462 2505 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Sept9-204ENSMUST00000106349 2932 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Rbm3-201ENSMUST00000040010 2792 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Grip1-205ENSMUST00000105262 4996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Capn5-201ENSMUST00000040971 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Cap1-201ENSMUST00000069533 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm15617-201ENSMUST00000118973 771 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm13668-201ENSMUST00000119237 1001 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm14942-201ENSMUST00000119642 336 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm9089-201ENSMUST00000122027 526 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm22442-201ENSMUST00000157256 144 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm8459-201ENSMUST00000162504 760 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm6407-201ENSMUST00000176468 549 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm5342-201ENSMUST00000181982 1003 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm6771-201ENSMUST00000182716 1001 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 4930513D17Rik-203ENSMUST00000202800 1159 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm19091-201ENSMUST00000208120 978 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm45120-201ENSMUST00000208880 408 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm45682-201ENSMUST00000209434 1256 ntTSL 5 BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm9139-201ENSMUST00000218817 700 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm46336-201ENSMUST00000221894 279 ntTSL 5 BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 AC154184.3-201ENSMUST00000225620 1090 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm4978-201ENSMUST00000071565 801 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Olfr584-201ENSMUST00000098210 964 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Thbs2-201ENSMUST00000170872 5922 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Tnc-201ENSMUST00000030056 6833 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm31938-201ENSMUST00000218081 1818 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gabrr2-201ENSMUST00000024035 1820 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Trmt12-201ENSMUST00000036937 4454 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Gm37648-201ENSMUST00000192072 2563 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Ccnt2-201ENSMUST00000027587 6738 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Zmat1-201ENSMUST00000064659 3501 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Spata33-207ENSMUST00000212760 4074 ntBASIC11.04□□□□□ -0.64
Sh3rf1Q69ZI1 Nudt13-207ENSMUST00000224311 1574 ntBASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Clcn6-205ENSMUST00000137724 5198 ntAPPRIS ALT1 TSL 5 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Ubash3a-201ENSMUST00000048656 2945 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm37859-201ENSMUST00000195529 2173 ntBASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Hps4-202ENSMUST00000112359 3345 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm16702-201ENSMUST00000181180 2384 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Mei4-203ENSMUST00000189832 2578 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm45675-201ENSMUST00000211202 3429 ntBASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm12439-201ENSMUST00000117162 365 ntBASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm12856-201ENSMUST00000119471 1293 ntBASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm14913-201ENSMUST00000120011 1093 ntBASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm26047-201ENSMUST00000157308 113 ntBASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm26047-202ENSMUST00000198840 115 ntBASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm42588-201ENSMUST00000200538 1297 ntBASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm44158-201ENSMUST00000203881 505 ntBASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm32111-201ENSMUST00000207689 846 ntBASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Fndc7-207ENSMUST00000180063 4820 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Arhgap6-204ENSMUST00000112129 2487 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Epx-201ENSMUST00000049768 2689 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Tldc1-201ENSMUST00000049156 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Ap5z1-201ENSMUST00000038699 3689 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Fam90a1b-201ENSMUST00000044989 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Ccin-201ENSMUST00000095107 1941 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Fnbp1l-201ENSMUST00000162409 5198 ntTSL 5 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Anapc15-213ENSMUST00000178851 2797 ntTSL 2 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 St6galnac4-201ENSMUST00000102818 3626 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Sept9-205ENSMUST00000106354 3869 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Agpat3-204ENSMUST00000105389 3678 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Gm11735-201ENSMUST00000106377 1581 ntBASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Tor4a-201ENSMUST00000081869 3255 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Ptpre-205ENSMUST00000210833 2209 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sh3rf1Q69ZI1 Atp13a4-201ENSMUST00000039090 2878 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Sh3rf1Q69ZI1 Gm13694-201ENSMUST00000178533 2493 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
Sh3rf1Q69ZI1 Gm13693-201ENSMUST00000178960 2493 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
Sh3rf1Q69ZI1 Gm13698-202ENSMUST00000179192 2493 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
Sh3rf1Q69ZI1 Gm13696-202ENSMUST00000180347 2493 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
Sh3rf1Q69ZI1 Gm13691-201ENSMUST00000099947 2493 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
Sh3rf1Q69ZI1 Gm13697-201ENSMUST00000099948 2493 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
Sh3rf1Q69ZI1 Gm13695-201ENSMUST00000099951 2493 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
Sh3rf1Q69ZI1 Gm11131-201ENSMUST00000113886 3122 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Sh3rf1Q69ZI1 2810454H06Rik-201ENSMUST00000189942 3148 ntBASIC11.02□□□□□ -0.64
Sh3rf1Q69ZI1 Trpc6-202ENSMUST00000214596 2913 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Sh3rf1Q69ZI1 Chp1-202ENSMUST00000119172 3027 ntTSL 2 BASIC11.02□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms