Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC12□□□□□ -0.49
Hmgb1P63158 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
Hmgb1P63158 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Hmgb1P63158 Slc45a1-202ENSMUST00000117997 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Gm15264-201ENSMUST00000118050 502 ntBASIC12□□□□□ -0.49
Hmgb1P63158 Gm15432-201ENSMUST00000121106 195 ntBASIC12□□□□□ -0.49
Hmgb1P63158 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC12□□□□□ -0.49
Hmgb1P63158 Gm12224-201ENSMUST00000124047 567 ntTSL 2 BASIC12□□□□□ -0.49
Hmgb1P63158 Prorsd1-202ENSMUST00000133103 2126 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Gm13709-201ENSMUST00000138573 614 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC12□□□□□ -0.49
Hmgb1P63158 4930571N24Rik-202ENSMUST00000142914 598 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Gm10051-201ENSMUST00000145209 414 ntBASIC12□□□□□ -0.49
Hmgb1P63158 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Hmgb1P63158 Gm3233-201ENSMUST00000168997 693 ntAPPRIS P1 BASIC12□□□□□ -0.49
Hmgb1P63158 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Hmgb1P63158 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC12□□□□□ -0.49
Hmgb1P63158 Polr1d-204ENSMUST00000200993 1167 ntTSL 5 BASIC12□□□□□ -0.49
Hmgb1P63158 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC12□□□□□ -0.49
Hmgb1P63158 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC12□□□□□ -0.49
Hmgb1P63158 AC122305.2-201ENSMUST00000215148 834 ntBASIC12□□□□□ -0.49
Hmgb1P63158 AC122035.1-201ENSMUST00000227576 1016 ntBASIC12□□□□□ -0.49
Hmgb1P63158 AC159103.1-201ENSMUST00000228325 429 ntBASIC12□□□□□ -0.49
Hmgb1P63158 AC154528.2-201ENSMUST00000228432 3023 ntBASIC12□□□□□ -0.49
Hmgb1P63158 Arhgef2-231ENSMUST00000177498 3966 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Zbtb21-202ENSMUST00000063605 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Nfkbiz-202ENSMUST00000096026 4067 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Tfam-201ENSMUST00000092430 4167 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Rbbp5-201ENSMUST00000027700 3385 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Dzip1l-203ENSMUST00000112885 4350 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Gm7742-201ENSMUST00000167648 1527 ntBASIC12□□□□□ -0.49
Hmgb1P63158 Gm7732-201ENSMUST00000170486 1527 ntBASIC12□□□□□ -0.49
Hmgb1P63158 Gm7740-201ENSMUST00000186171 1527 ntBASIC12□□□□□ -0.49
Hmgb1P63158 Gm7736-201ENSMUST00000096981 1527 ntBASIC12□□□□□ -0.49
Hmgb1P63158 Grik1-201ENSMUST00000023652 3554 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Armc1-201ENSMUST00000029125 3673 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Gm28403-201ENSMUST00000188743 2710 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Clu-201ENSMUST00000022616 1810 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hmgb1P63158 Lrrc8a-201ENSMUST00000095078 4301 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Hmgb1P63158 Man2c1-201ENSMUST00000034836 3215 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Clec14a-201ENSMUST00000062254 4571 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Myh13-203ENSMUST00000180845 5991 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Havcr1-202ENSMUST00000081819 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Scrn1-201ENSMUST00000019268 4810 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Eif4e1b-201ENSMUST00000110003 2131 ntAPPRIS P3 TSL 2 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Psd-202ENSMUST00000096029 3903 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Sec22c-201ENSMUST00000078547 5713 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Akap12-202ENSMUST00000215696 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Gm10031-201ENSMUST00000190422 2653 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Gtf2h3-201ENSMUST00000031333 2672 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Mta1-202ENSMUST00000069690 2697 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Hmgb1P63158 8030423F21Rik-201ENSMUST00000064097 2851 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Zfp629-203ENSMUST00000122066 5850 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Madd-202ENSMUST00000066473 5974 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Tiam2-201ENSMUST00000072156 6127 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Ccdc85a-206ENSMUST00000146385 3798 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Hint1-202ENSMUST00000117710 580 ntTSL 2 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC11.99□□□□□ -0.49
Hmgb1P63158 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC11.99□□□□□ -0.49
Hmgb1P63158 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC11.99□□□□□ -0.49
Hmgb1P63158 Gm37852-201ENSMUST00000193027 350 ntBASIC11.99□□□□□ -0.49
Hmgb1P63158 Gm9445-201ENSMUST00000207454 1285 ntBASIC11.99□□□□□ -0.49
Hmgb1P63158 Gm5599-201ENSMUST00000209602 788 ntBASIC11.99□□□□□ -0.49
Hmgb1P63158 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Btg4-203ENSMUST00000213680 1282 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Tmem181b-ps-201ENSMUST00000167717 1413 ntBASIC11.99□□□□□ -0.49
Hmgb1P63158 Cpvl-202ENSMUST00000203101 1488 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 4933425M03Rik-201ENSMUST00000195991 1544 ntBASIC11.99□□□□□ -0.49
Hmgb1P63158 Bet1-201ENSMUST00000049166 1516 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Ppp1r17-201ENSMUST00000052827 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Gm28624-201ENSMUST00000186430 2131 ntBASIC11.99□□□□□ -0.49
Hmgb1P63158 Slc1a2-201ENSMUST00000005220 2127 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Etv3-201ENSMUST00000117293 2151 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Col6a6-203ENSMUST00000166431 7098 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Cabin1-201ENSMUST00000001712 7417 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Klhl41-201ENSMUST00000100050 2529 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Gm38111-201ENSMUST00000194817 2741 ntBASIC11.99□□□□□ -0.49
Hmgb1P63158 Npy1r-202ENSMUST00000212588 2770 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Pex26-203ENSMUST00000120066 3861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hmgb1P63158 Ehmt1-205ENSMUST00000114432 4539 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Hmgb1P63158 Col4a3-201ENSMUST00000113457 8554 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb1P63158 Ahrr-201ENSMUST00000022059 4754 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb1P63158 Trim36-202ENSMUST00000167364 4543 ntTSL 5 BASIC11.98□□□□□ -0.49
Hmgb1P63158 Dhx34-202ENSMUST00000118795 4076 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Hmgb1P63158 Trp53inp2-201ENSMUST00000043237 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hmgb1P63158 Rcbtb2-219ENSMUST00000169513 3622 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms