Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sox1P53783 Glb1l-201ENSMUST00000113623 2339 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
Sox1P53783 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
Sox1P53783 Rack1-201ENSMUST00000020640 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sox1P53783 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sox1P53783 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sox1P53783 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sox1P53783 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sox1P53783 Mcph1-205ENSMUST00000146819 2067 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Sox1P53783 Rffl-201ENSMUST00000021036 1719 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Sox1P53783 Gm42480-201ENSMUST00000198434 2595 ntBASIC11.15□□□□□ -0.63
Sox1P53783 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.63
Sox1P53783 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Sox1P53783 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.63
Sox1P53783 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Dcstamp-205ENSMUST00000228556 1684 ntBASIC11.14□□□□□ -0.63
Sox1P53783 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Sox1P53783 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 H2-DMb2-202ENSMUST00000171231 1483 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 AC127597.1-201ENSMUST00000225697 5711 ntBASIC11.14□□□□□ -0.63
Sox1P53783 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Gm44664-201ENSMUST00000206841 1786 ntBASIC11.14□□□□□ -0.63
Sox1P53783 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Stmn3-201ENSMUST00000103045 1136 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Trgv2-201ENSMUST00000103563 491 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Sox1P53783 Gm436-201ENSMUST00000105747 1224 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Sox1P53783 E030025P04Rik-201ENSMUST00000106710 1078 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Gm11077-201ENSMUST00000111844 84 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Sox1P53783 Odam-201ENSMUST00000113274 872 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Gm15661-201ENSMUST00000117390 556 ntBASIC11.14□□□□□ -0.63
Sox1P53783 Gm13333-201ENSMUST00000119424 781 ntBASIC11.14□□□□□ -0.63
Sox1P53783 Gm15650-201ENSMUST00000135451 770 ntTSL 3 BASIC11.14□□□□□ -0.63
Sox1P53783 Atp6v1c2-207ENSMUST00000156727 1279 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Gm16268-201ENSMUST00000159445 1157 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Gast-201ENSMUST00000017309 460 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Gm5274-201ENSMUST00000182641 1003 ntBASIC11.14□□□□□ -0.63
Sox1P53783 B130024G19Rik-204ENSMUST00000191084 634 ntTSL 5 BASIC11.14□□□□□ -0.63
Sox1P53783 Ighv1-33-201ENSMUST00000193220 350 ntBASIC11.14□□□□□ -0.63
Sox1P53783 Gm42620-201ENSMUST00000197715 630 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Gm6008-201ENSMUST00000206542 874 ntBASIC11.14□□□□□ -0.63
Sox1P53783 Gm45670-201ENSMUST00000211382 711 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Gm35239-201ENSMUST00000218346 487 ntTSL 3 BASIC11.14□□□□□ -0.63
Sox1P53783 Tcf21-201ENSMUST00000049930 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Ifne-201ENSMUST00000056014 664 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Sox1P53783 Polr2k-201ENSMUST00000057177 601 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Olfr649-201ENSMUST00000060440 939 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Sox1P53783 Olfr47-201ENSMUST00000078057 1059 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Sox1P53783 Prl6a1-201ENSMUST00000091679 1093 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Sox1P53783 Prl6a1-202ENSMUST00000091680 868 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Gm10689-201ENSMUST00000098864 432 ntBASIC11.14□□□□□ -0.63
Sox1P53783 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Gm29245-201ENSMUST00000187332 1416 ntBASIC11.14□□□□□ -0.63
Sox1P53783 Ccl6-201ENSMUST00000019071 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Arrb2-201ENSMUST00000079056 1443 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Aldh3a1-202ENSMUST00000108716 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Ccdc65-201ENSMUST00000003444 1890 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC11.14□□□□□ -0.63
Sox1P53783 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Sox1P53783 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC11.14□□□□□ -0.63
Sox1P53783 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC11.14□□□□□ -0.63
Sox1P53783 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC11.14□□□□□ -0.63
Sox1P53783 Mettl8-201ENSMUST00000090849 1842 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sox1P53783 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sox1P53783 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Sox1P53783 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC11.13□□□□□ -0.63
Sox1P53783 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sox1P53783 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sox1P53783 Hsd3b1-202ENSMUST00000107016 1855 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sox1P53783 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sox1P53783 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Sox1P53783 Gm27177-202ENSMUST00000183514 2703 ntBASIC11.13□□□□□ -0.63
Sox1P53783 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Sox1P53783 Zfp830-201ENSMUST00000056677 1591 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Sox1P53783 A930003A15Rik-201ENSMUST00000100083 746 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sox1P53783 Tmem254c-201ENSMUST00000100818 1066 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Sox1P53783 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC11.13□□□□□ -0.63
Sox1P53783 Olfr62-201ENSMUST00000102666 949 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Sox1P53783 Ighv1-22-201ENSMUST00000103507 351 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Sox1P53783 Snora68-201ENSMUST00000104375 131 ntBASIC11.13□□□□□ -0.63
Sox1P53783 Klra9-202ENSMUST00000112032 1279 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sox1P53783 Stard4-202ENSMUST00000118990 648 ntTSL 2 BASIC11.13□□□□□ -0.63
Sox1P53783 Gm13217-201ENSMUST00000120466 953 ntBASIC11.13□□□□□ -0.63
Sox1P53783 Gm12362-201ENSMUST00000121986 342 ntBASIC11.13□□□□□ -0.63
Sox1P53783 Apela-201ENSMUST00000124790 945 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms