Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 AC166902.2-202ENSMUST00000213191 1038 ntTSL 5 BASIC16.42■□□□□ 0.22
Cux1P53564 AC123061.1-201ENSMUST00000228021 999 ntBASIC16.42■□□□□ 0.22
Cux1P53564 Sun5-201ENSMUST00000028982 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cux1P53564 Gm25483-201ENSMUST00000083224 227 ntBASIC16.42■□□□□ 0.22
Cux1P53564 Cd247-202ENSMUST00000027849 1317 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cux1P53564 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cux1P53564 Gm37582-201ENSMUST00000192953 1409 ntBASIC16.42■□□□□ 0.22
Cux1P53564 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cux1P53564 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cux1P53564 Gm14858-201ENSMUST00000138614 1758 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cux1P53564 Gm26953-209ENSMUST00000213051 2087 ntTSL 5 BASIC16.42■□□□□ 0.22
Cux1P53564 Galm-201ENSMUST00000039205 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cux1P53564 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Cux1P53564 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Cux1P53564 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Cux1P53564 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cux1P53564 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cux1P53564 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cux1P53564 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cux1P53564 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC16.41■□□□□ 0.22
Cux1P53564 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC16.41■□□□□ 0.22
Cux1P53564 Txk-203ENSMUST00000197313 2190 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC16.41■□□□□ 0.22
Cux1P53564 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Gm11411-201ENSMUST00000117951 719 ntBASIC16.41■□□□□ 0.22
Cux1P53564 Lypla1-203ENSMUST00000119612 529 ntTSL 3 BASIC16.41■□□□□ 0.22
Cux1P53564 Glmp-207ENSMUST00000176425 960 ntTSL 5 BASIC16.41■□□□□ 0.22
Cux1P53564 Acsm5-204ENSMUST00000207387 1130 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Gm32098-201ENSMUST00000211305 479 ntTSL 5 BASIC16.41■□□□□ 0.22
Cux1P53564 Tcl1b1-202ENSMUST00000222342 664 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
Cux1P53564 Gm18749-201ENSMUST00000222410 692 ntBASIC16.41■□□□□ 0.22
Cux1P53564 Tnnt1-201ENSMUST00000071798 1027 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC16.41■□□□□ 0.22
Cux1P53564 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Foxr1-201ENSMUST00000098837 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Bzw2-201ENSMUST00000020856 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Tra2b-204ENSMUST00000161286 3403 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cux1P53564 Il10-201ENSMUST00000016673 1310 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 0610037L13Rik-203ENSMUST00000106726 515 ntTSL 5 BASIC16.4■□□□□ 0.22
Cux1P53564 Eif4e1b-201ENSMUST00000110003 2131 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
Cux1P53564 Gm14853-201ENSMUST00000116081 549 ntBASIC16.4■□□□□ 0.22
Cux1P53564 Pttg1ip-208ENSMUST00000162943 721 ntAPPRIS ALT2 TSL 3 BASIC16.4■□□□□ 0.22
Cux1P53564 Gm17225-201ENSMUST00000172051 497 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Gm8625-201ENSMUST00000194185 1077 ntBASIC16.4■□□□□ 0.22
Cux1P53564 4930573C15Rik-201ENSMUST00000197707 777 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Ckb-ps2-201ENSMUST00000198886 1001 ntBASIC16.4■□□□□ 0.22
Cux1P53564 Gm8083-201ENSMUST00000203976 475 ntBASIC16.4■□□□□ 0.22
Cux1P53564 Gm44173-201ENSMUST00000204316 132 ntBASIC16.4■□□□□ 0.22
Cux1P53564 Nqo2-203ENSMUST00000220844 957 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Btn2a2-204ENSMUST00000223877 2109 ntAPPRIS ALT2 BASIC16.4■□□□□ 0.22
Cux1P53564 CT025689.5-201ENSMUST00000224316 986 ntBASIC16.4■□□□□ 0.22
Cux1P53564 AC159006.3-201ENSMUST00000226918 664 ntBASIC16.4■□□□□ 0.22
Cux1P53564 AC161581.1-201ENSMUST00000228696 318 ntBASIC16.4■□□□□ 0.22
Cux1P53564 Scgb3a1-201ENSMUST00000043873 493 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Scgb3a1-202ENSMUST00000076006 598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Ap1m2-202ENSMUST00000115433 2586 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Cux1P53564 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Gm4880-201ENSMUST00000207645 1696 ntBASIC16.4■□□□□ 0.22
Cux1P53564 Hyal2-206ENSMUST00000195681 2968 ntBASIC16.4■□□□□ 0.22
Cux1P53564 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
Cux1P53564 Lig3-210ENSMUST00000173347 3631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Gm14538-201ENSMUST00000122019 1327 ntBASIC16.4■□□□□ 0.22
Cux1P53564 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Cux1P53564 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Cux1P53564 Acvr1-203ENSMUST00000112599 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Lrrc57-201ENSMUST00000102496 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Sh3bgrl3-202ENSMUST00000105879 518 ntTSL 3 BASIC16.4■□□□□ 0.22
Cux1P53564 Gm44805-201ENSMUST00000127648 765 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Cux1P53564 Faap24-203ENSMUST00000154597 831 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
Cux1P53564 C130080G10Rik-204ENSMUST00000155185 954 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Gm27241-201ENSMUST00000183517 622 ntTSL 3 BASIC16.4■□□□□ 0.22
Cux1P53564 B130024G19Rik-204ENSMUST00000191084 634 ntTSL 5 BASIC16.4■□□□□ 0.22
Cux1P53564 Gm45846-201ENSMUST00000211170 446 ntTSL 2 BASIC16.4■□□□□ 0.22
Cux1P53564 Gm6859-201ENSMUST00000218614 989 ntBASIC16.4■□□□□ 0.22
Cux1P53564 Nsmce2-201ENSMUST00000079703 1054 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cux1P53564 Smpd4-219ENSMUST00000170366 2256 ntTSL 5 BASIC16.4■□□□□ 0.22
Cux1P53564 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Cux1P53564 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC16.4■□□□□ 0.22
Cux1P53564 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC16.39■□□□□ 0.21
Cux1P53564 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Cux1P53564 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cux1P53564 Dyrk4-202ENSMUST00000078521 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cux1P53564 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms