Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shmt1P50431 Ddr1-212ENSMUST00000166980 3627 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shmt1P50431 Atp1a3-205ENSMUST00000196684 3642 ntTSL 5 BASIC11.47□□□□□ -0.57
Shmt1P50431 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shmt1P50431 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Shmt1P50431 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Shmt1P50431 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shmt1P50431 Gm38273-201ENSMUST00000194987 2382 ntBASIC11.47□□□□□ -0.57
Shmt1P50431 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shmt1P50431 Edn1-201ENSMUST00000021796 2139 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shmt1P50431 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC11.47□□□□□ -0.57
Shmt1P50431 AA474408-201ENSMUST00000098110 3339 ntBASIC11.47□□□□□ -0.57
Shmt1P50431 Mobp-202ENSMUST00000093773 3286 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shmt1P50431 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shmt1P50431 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Cd247-205ENSMUST00000161559 1816 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Pced1b-204ENSMUST00000228521 1790 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Shmt1P50431 Gm38312-201ENSMUST00000195426 1746 ntBASIC11.46□□□□□ -0.57
Shmt1P50431 4930432L08Rik-201ENSMUST00000132154 1608 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Fcgr2b-204ENSMUST00000159969 1578 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Cxcl11-201ENSMUST00000077820 1581 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Shmt1P50431 Mical1-203ENSMUST00000119962 3565 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Shmt1P50431 Gm15984-202ENSMUST00000156466 1534 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Gm19680-201ENSMUST00000095050 1513 ntBASIC11.46□□□□□ -0.57
Shmt1P50431 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Shmt1P50431 Fanca-202ENSMUST00000118395 3274 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Dhdds-209ENSMUST00000144668 3219 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 9430015G10Rik-202ENSMUST00000105576 1329 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC11.46□□□□□ -0.57
Shmt1P50431 C2-206ENSMUST00000152417 2157 ntTSL 5 BASIC11.46□□□□□ -0.57
Shmt1P50431 AC154528.2-201ENSMUST00000228432 3023 ntBASIC11.46□□□□□ -0.57
Shmt1P50431 Specc1l-204ENSMUST00000218766 4725 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Mrpl55-205ENSMUST00000108787 718 ntTSL 2 BASIC11.46□□□□□ -0.57
Shmt1P50431 Gm11578-201ENSMUST00000118530 459 ntBASIC11.46□□□□□ -0.57
Shmt1P50431 Gm12570-201ENSMUST00000122047 1030 ntBASIC11.46□□□□□ -0.57
Shmt1P50431 9230111E07Rik-201ENSMUST00000124850 811 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Gm15569-201ENSMUST00000133675 594 ntTSL 3 BASIC11.46□□□□□ -0.57
Shmt1P50431 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Smim20-201ENSMUST00000147148 922 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 C330021F23Rik-204ENSMUST00000151633 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Uckl1os-207ENSMUST00000152365 442 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Gm13572-201ENSMUST00000153675 559 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Gm8451-201ENSMUST00000170338 447 ntBASIC11.46□□□□□ -0.57
Shmt1P50431 Platr17-201ENSMUST00000172817 807 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Gm20392-201ENSMUST00000173047 701 ntBASIC11.46□□□□□ -0.57
Shmt1P50431 Scgb2b7-201ENSMUST00000178258 520 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Gm28529-201ENSMUST00000186159 387 ntTSL 3 BASIC11.46□□□□□ -0.57
Shmt1P50431 4930478P22Rik-202ENSMUST00000201921 723 ntTSL 3 BASIC11.46□□□□□ -0.57
Shmt1P50431 Ormdl2-203ENSMUST00000219215 1051 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Gm32939-201ENSMUST00000222336 843 ntTSL 3 BASIC11.46□□□□□ -0.57
Shmt1P50431 AC116680.1-201ENSMUST00000222804 613 ntTSL 3 BASIC11.46□□□□□ -0.57
Shmt1P50431 Gm5453-201ENSMUST00000080866 447 ntBASIC11.46□□□□□ -0.57
Shmt1P50431 C330021F23Rik-201ENSMUST00000086479 1111 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.57
Shmt1P50431 Mpl-202ENSMUST00000102671 2934 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Gpcpd1-202ENSMUST00000060955 3686 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shmt1P50431 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC11.46□□□□□ -0.58
Shmt1P50431 Lig3-210ENSMUST00000173347 3631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Eef1b2-204ENSMUST00000129339 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Pcdh20-202ENSMUST00000192557 3362 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Txndc16-203ENSMUST00000123879 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Stk31-201ENSMUST00000024171 3237 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Gm12530-201ENSMUST00000152074 1759 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Gm42858-201ENSMUST00000202512 1704 ntBASIC11.46□□□□□ -0.58
Shmt1P50431 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Qrfpr-203ENSMUST00000197447 1690 ntTSL 5 BASIC11.46□□□□□ -0.58
Shmt1P50431 Rep15-201ENSMUST00000036194 1662 ntAPPRIS P1 BASIC11.46□□□□□ -0.58
Shmt1P50431 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Sptbn5-204ENSMUST00000156159 3625 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
Shmt1P50431 Kcne2-202ENSMUST00000113971 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 Tmprss5-202ENSMUST00000165088 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shmt1P50431 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC11.45□□□□□ -0.58
Shmt1P50431 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shmt1P50431 Eif4e1b-201ENSMUST00000110003 2131 ntAPPRIS P3 TSL 2 BASIC11.45□□□□□ -0.58
Shmt1P50431 Slc4a9-201ENSMUST00000074298 2714 ntAPPRIS P3 TSL 5 BASIC11.45□□□□□ -0.58
Shmt1P50431 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shmt1P50431 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Shmt1P50431 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Shmt1P50431 Stat5a-202ENSMUST00000107356 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shmt1P50431 Mocs2-216ENSMUST00000184672 1447 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Shmt1P50431 Gm42641-202ENSMUST00000160217 4248 ntAPPRIS P5 TSL 2 BASIC11.45□□□□□ -0.58
Shmt1P50431 Hspa2-201ENSMUST00000080449 2524 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shmt1P50431 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Shmt1P50431 Magel2-201ENSMUST00000080403 4631 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Shmt1P50431 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shmt1P50431 Galm-201ENSMUST00000039205 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shmt1P50431 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shmt1P50431 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms