Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Acadsb-202ENSMUST00000117518 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Sh3bgrl-201ENSMUST00000033598 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Ccdc33-204ENSMUST00000119665 2552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Gm45140-202ENSMUST00000204419 5061 ntAPPRIS P5 TSL 5 BASIC12.91□□□□□ -0.34
Rfx1P48377 5730403I07Rik-201ENSMUST00000183878 2033 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Mx1-202ENSMUST00000113768 2695 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 E2f7-204ENSMUST00000173471 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Gria4-202ENSMUST00000063508 5352 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Hspa2-201ENSMUST00000080449 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Zfp956-201ENSMUST00000101445 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Gm28624-201ENSMUST00000186430 2131 ntBASIC12.91□□□□□ -0.34
Rfx1P48377 Babam2-204ENSMUST00000114515 1497 ntTSL 5 BASIC12.91□□□□□ -0.34
Rfx1P48377 Pcdhga1-201ENSMUST00000194190 4692 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Cdcp2-201ENSMUST00000062495 2611 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC12.91□□□□□ -0.34
Rfx1P48377 Ogfod1-202ENSMUST00000093301 5141 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Satb1-207ENSMUST00000140979 3748 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Rfx1P48377 Eid3-201ENSMUST00000211623 1305 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Rfx1P48377 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Gm37242-201ENSMUST00000191873 2085 ntBASIC12.9□□□□□ -0.34
Rfx1P48377 Rufy2-204ENSMUST00000131718 2816 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Cenpj-203ENSMUST00000225951 4756 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Rfx1P48377 Dcc-201ENSMUST00000073379 4855 ntTSL 5 BASIC12.9□□□□□ -0.34
Rfx1P48377 Madd-204ENSMUST00000077941 5990 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
Rfx1P48377 Madd-205ENSMUST00000099723 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Nr1h4-203ENSMUST00000105297 2013 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Olfr707-204ENSMUST00000213251 1777 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Rfx1P48377 Cts7-201ENSMUST00000021892 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Rfx1P48377 Gm15264-201ENSMUST00000118050 502 ntBASIC12.9□□□□□ -0.34
Rfx1P48377 Gm15486-201ENSMUST00000135147 604 ntTSL 3 BASIC12.9□□□□□ -0.34
Rfx1P48377 Gm26083-201ENSMUST00000157904 193 ntBASIC12.9□□□□□ -0.34
Rfx1P48377 Gstp-ps-201ENSMUST00000195526 631 ntBASIC12.9□□□□□ -0.34
Rfx1P48377 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC12.9□□□□□ -0.34
Rfx1P48377 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC12.9□□□□□ -0.34
Rfx1P48377 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Gm5468-202ENSMUST00000227851 682 ntBASIC12.9□□□□□ -0.34
Rfx1P48377 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC12.9□□□□□ -0.34
Rfx1P48377 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Wfdc6a-201ENSMUST00000099096 805 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Spats2l-206ENSMUST00000167085 3929 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Ncmap-203ENSMUST00000105858 1616 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 P4ha1-201ENSMUST00000009789 4043 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Bbs7-201ENSMUST00000040148 2599 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Morf4l2-213ENSMUST00000166478 1720 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Rfx1P48377 Gm44115-201ENSMUST00000203917 2069 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC12.9□□□□□ -0.34
Rfx1P48377 Qrfpr-201ENSMUST00000091227 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Samd4-206ENSMUST00000137543 6874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Rfx1P48377 Zmynd8-205ENSMUST00000109266 5072 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.35
Rfx1P48377 Gm37567-201ENSMUST00000193241 2279 ntBASIC12.9□□□□□ -0.35
Rfx1P48377 Gm7357-201ENSMUST00000195361 2991 ntBASIC12.9□□□□□ -0.35
Rfx1P48377 Vamp5-203ENSMUST00000206154 2619 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
Rfx1P48377 Tacr1-201ENSMUST00000032122 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Atl2-201ENSMUST00000068282 3618 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Upk1b-201ENSMUST00000057767 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Sh3glb1-204ENSMUST00000199531 2584 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 5830462I19Rik-201ENSMUST00000168137 3383 ntBASIC12.89□□□□□ -0.35
Rfx1P48377 Plekha7-206ENSMUST00000182487 3476 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Rfx1P48377 Gm42427-201ENSMUST00000200473 5292 ntBASIC12.89□□□□□ -0.35
Rfx1P48377 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Rangap1-201ENSMUST00000052374 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Zdhhc3-208ENSMUST00000147563 6987 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 AC144938.1-201ENSMUST00000223994 2167 ntBASIC12.89□□□□□ -0.35
Rfx1P48377 Txlng-204ENSMUST00000112316 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Agrn-203ENSMUST00000105575 7262 ntTSL 5 BASIC12.89□□□□□ -0.35
Rfx1P48377 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC12.89□□□□□ -0.35
Rfx1P48377 4930589P08Rik-201ENSMUST00000129097 1084 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC12.89□□□□□ -0.35
Rfx1P48377 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC12.89□□□□□ -0.35
Rfx1P48377 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Rfx1P48377 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC12.89□□□□□ -0.35
Rfx1P48377 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC12.89□□□□□ -0.35
Rfx1P48377 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Gm10020-201ENSMUST00000081993 612 ntBASIC12.89□□□□□ -0.35
Rfx1P48377 Gm23105-201ENSMUST00000083719 134 ntBASIC12.89□□□□□ -0.35
Rfx1P48377 Olfr1163-201ENSMUST00000099835 1043 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Rfx1P48377 Gm12367-202ENSMUST00000146909 2105 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Traf3-201ENSMUST00000021706 7060 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Usp47-206ENSMUST00000215510 4697 ntTSL 5 BASIC12.89□□□□□ -0.35
Rfx1P48377 1700047M11Rik-202ENSMUST00000189594 2607 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Ap4m1-201ENSMUST00000019662 3479 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 D030055H07Rik-202ENSMUST00000150953 4325 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Adcy3-201ENSMUST00000020984 4348 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rfx1P48377 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Rfx1P48377 Gm37333-201ENSMUST00000192904 2251 ntBASIC12.88□□□□□ -0.35
Rfx1P48377 Zfp873-203ENSMUST00000209622 2284 ntTSL 2 BASIC12.88□□□□□ -0.35
Rfx1P48377 Dhdds-209ENSMUST00000144668 3219 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms