Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC8.9□□□□□ -0.98
Hmgb3O54879 Gm6621-201ENSMUST00000193251 772 ntBASIC8.9□□□□□ -0.98
Hmgb3O54879 Gm9728-201ENSMUST00000200197 1055 ntBASIC8.9□□□□□ -0.98
Hmgb3O54879 Gm6334-201ENSMUST00000207083 228 ntBASIC8.9□□□□□ -0.98
Hmgb3O54879 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC8.9□□□□□ -0.98
Hmgb3O54879 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC8.9□□□□□ -0.98
Hmgb3O54879 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Smcr8-201ENSMUST00000056907 7391 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Ccdc63-201ENSMUST00000058960 2299 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 9630001P10Rik-201ENSMUST00000181083 2799 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Wdr78-201ENSMUST00000036451 3671 ntTSL 5 BASIC8.9□□□□□ -0.98
Hmgb3O54879 Gm13920-201ENSMUST00000146134 1663 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Gm12367-202ENSMUST00000146909 2105 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
Hmgb3O54879 Atp8b3-201ENSMUST00000020383 4412 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
Hmgb3O54879 Amer3-201ENSMUST00000052670 4392 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
Hmgb3O54879 Fam122b-201ENSMUST00000071023 4334 ntAPPRIS P3 TSL 1 (best) BASIC8.9□□□□□ -0.99
Hmgb3O54879 Doxl2-203ENSMUST00000184917 2468 ntAPPRIS P1 TSL 3 BASIC8.9□□□□□ -0.99
Hmgb3O54879 Ccdc141-202ENSMUST00000049544 8969 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
Hmgb3O54879 C230021G24Rik-201ENSMUST00000181196 3679 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
Hmgb3O54879 Cckar-202ENSMUST00000200691 3230 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
Hmgb3O54879 Ctc1-202ENSMUST00000116359 3978 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm44445-201ENSMUST00000204075 2683 ntBASIC8.89□□□□□ -0.99
Hmgb3O54879 9430064I24Rik-201ENSMUST00000206516 2669 ntBASIC8.89□□□□□ -0.99
Hmgb3O54879 Ercc6-201ENSMUST00000066807 8423 ntAPPRIS P1 TSL 5 BASIC8.89□□□□□ -0.99
Hmgb3O54879 Tomm40l-201ENSMUST00000005817 4712 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Myt1-202ENSMUST00000108756 5509 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 1700047M11Rik-202ENSMUST00000189594 2607 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Slc6a12-201ENSMUST00000032200 2644 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Hinfp-205ENSMUST00000216508 5333 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Ccdc171-201ENSMUST00000053414 4525 ntAPPRIS P2 TSL 5 BASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm27177-201ENSMUST00000183339 2946 ntTSL 5 BASIC8.89□□□□□ -0.99
Hmgb3O54879 Mitf-202ENSMUST00000043637 4881 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Epb41-206ENSMUST00000105974 4844 ntTSL 5 BASIC8.89□□□□□ -0.99
Hmgb3O54879 Sh3bgrl-201ENSMUST00000033598 2882 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Daam2-201ENSMUST00000057610 3646 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Glyctk-201ENSMUST00000036382 4209 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Ppp2r5c-205ENSMUST00000221715 2367 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm13296-201ENSMUST00000117854 997 ntBASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm11941-201ENSMUST00000119904 610 ntBASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm14726-201ENSMUST00000120623 896 ntBASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm11424-201ENSMUST00000121929 829 ntBASIC8.89□□□□□ -0.99
Hmgb3O54879 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Snora78-201ENSMUST00000158630 128 ntBASIC8.89□□□□□ -0.99
Hmgb3O54879 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC8.89□□□□□ -0.99
Hmgb3O54879 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm5342-201ENSMUST00000181982 1003 ntBASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm8885-201ENSMUST00000189382 598 ntBASIC8.89□□□□□ -0.99
Hmgb3O54879 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm5852-201ENSMUST00000194119 1021 ntBASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm37748-201ENSMUST00000194379 1140 ntBASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm38321-201ENSMUST00000195053 235 ntBASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC8.89□□□□□ -0.99
Hmgb3O54879 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC8.89□□□□□ -0.99
Hmgb3O54879 Aprt-ps-201ENSMUST00000212311 505 ntBASIC8.89□□□□□ -0.99
Hmgb3O54879 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Slc34a2-201ENSMUST00000094787 4176 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Pde11a-201ENSMUST00000099992 4189 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Ints6l-201ENSMUST00000039374 3766 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Slc35b4-201ENSMUST00000019143 6253 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Sema4d-203ENSMUST00000110040 4472 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Zscan21-203ENSMUST00000110959 2964 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Evc-203ENSMUST00000114154 3695 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Olfr1113-202ENSMUST00000215611 1949 ntAPPRIS P1 TSL 5 BASIC8.89□□□□□ -0.99
Hmgb3O54879 Bach2-207ENSMUST00000171600 8493 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Zfp292-201ENSMUST00000047950 9986 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Aebp1-202ENSMUST00000109829 2541 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 C2-206ENSMUST00000152417 2157 ntTSL 5 BASIC8.89□□□□□ -0.99
Hmgb3O54879 Gfi1b-204ENSMUST00000164290 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Snd1-201ENSMUST00000001460 3482 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Adcy3-201ENSMUST00000020984 4348 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Adar-202ENSMUST00000098924 5909 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Med19-201ENSMUST00000102645 2059 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Gm32511-202ENSMUST00000217021 2069 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Cdc6-201ENSMUST00000092706 4614 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hmgb3O54879 Fam83c-201ENSMUST00000029143 3972 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Gm3765-201ENSMUST00000130985 1447 ntBASIC8.88□□□□□ -0.99
Hmgb3O54879 Prpf4-201ENSMUST00000084524 5223 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 4732487G21Rik-201ENSMUST00000181495 2664 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC8.88□□□□□ -0.99
Hmgb3O54879 Mre11a-201ENSMUST00000034405 3286 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Utp15-201ENSMUST00000040972 4120 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Ing3-202ENSMUST00000115389 2546 ntTSL 5 BASIC8.88□□□□□ -0.99
Hmgb3O54879 Gm26527-201ENSMUST00000180416 1948 ntTSL 5 BASIC8.88□□□□□ -0.99
Hmgb3O54879 Cyp2j13-202ENSMUST00000097973 1648 ntTSL 5 BASIC8.88□□□□□ -0.99
Hmgb3O54879 Trim9-203ENSMUST00000167755 4559 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Dido1-205ENSMUST00000103056 4281 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 AC153370.2-201ENSMUST00000217920 3093 ntTSL 5 BASIC8.88□□□□□ -0.99
Hmgb3O54879 Fadd-201ENSMUST00000033394 3903 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Retrieved 100 of 76,532 protein–RNA pairs in 59.9 ms