Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Acsl4-201ENSMUST00000033634 5280 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Anks1b-218ENSMUST00000182595 3715 ntTSL 5 BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Tulp2-210ENSMUST00000210868 1664 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Gm43334-201ENSMUST00000197740 1318 ntBASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Gm38271-201ENSMUST00000192296 1603 ntBASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Fn1-203ENSMUST00000186129 7797 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Gm14270-201ENSMUST00000118388 846 ntBASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Gm12274-201ENSMUST00000120062 385 ntBASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Ighv2-1-201ENSMUST00000170946 353 ntBASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Mir8093-201ENSMUST00000185043 137 ntBASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Gm5621-201ENSMUST00000187303 640 ntBASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 AC159376.1-201ENSMUST00000218504 630 ntBASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 AC164437.3-201ENSMUST00000228323 347 ntBASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Ppp6r3-203ENSMUST00000172362 4633 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Pcdh18-201ENSMUST00000035931 5168 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Pabpc4-201ENSMUST00000078734 2700 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Tfap2b-204ENSMUST00000187754 3023 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Hhip-201ENSMUST00000079038 9074 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Mamld1-201ENSMUST00000082088 4796 ntAPPRIS P4 TSL 5 BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Slc1a2-204ENSMUST00000111213 2093 ntTSL 5 BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Prdm1-202ENSMUST00000105490 4025 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 Satb1-207ENSMUST00000140979 3748 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Smc1aQ9CU62 C130013H08Rik-201ENSMUST00000197569 3692 ntBASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Bnc2-202ENSMUST00000107198 3948 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Rbm3-201ENSMUST00000040010 2792 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Arhgap24-203ENSMUST00000094559 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Arhgef7-203ENSMUST00000098938 4628 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Rasgef1a-203ENSMUST00000203804 2183 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Spata33-207ENSMUST00000212760 4074 ntBASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Fam180a-201ENSMUST00000051176 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Ablim2-204ENSMUST00000114204 2953 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Lsamp-201ENSMUST00000078873 2951 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Mecomos-201ENSMUST00000125611 5510 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Slc9a8-202ENSMUST00000073873 4429 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 CT009713.5-203ENSMUST00000224218 2079 ntBASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Cenpx-203ENSMUST00000106154 873 ntTSL 2 BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 1700088E04Rik-210ENSMUST00000190509 871 ntTSL 5 BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Gm43695-201ENSMUST00000196545 196 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Gm8436-201ENSMUST00000210152 1080 ntBASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Gm5749-201ENSMUST00000210673 1090 ntBASIC12.19□□□□□ -0.46
Smc1aQ9CU62 CT030170.2-201ENSMUST00000223267 126 ntBASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Gm4604-201ENSMUST00000025040 390 ntBASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Gm8325-201ENSMUST00000099086 453 ntBASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Jmjd4-201ENSMUST00000045279 4315 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Dhx38-201ENSMUST00000042601 4463 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Cabin1-201ENSMUST00000001712 7417 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Gm19165-201ENSMUST00000204453 1982 ntBASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Sgca-202ENSMUST00000103162 1724 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Gm15784-201ENSMUST00000120260 1462 ntBASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Invs-201ENSMUST00000030029 5633 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Slc6a20b-201ENSMUST00000026273 6307 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Mtmr7-205ENSMUST00000174205 2679 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Sez6l-201ENSMUST00000075387 6055 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Rin1-208ENSMUST00000225427 4503 ntAPPRIS P2 BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Fcamr-202ENSMUST00000112477 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Smc1aQ9CU62 Srrm4-202ENSMUST00000139425 2798 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Lman1-201ENSMUST00000048260 3563 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 A130010J15Rik-205ENSMUST00000178744 3782 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Ippk-202ENSMUST00000220447 4421 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Pnma2-201ENSMUST00000089236 5518 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Htr1d-203ENSMUST00000121571 2426 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Gp2-201ENSMUST00000033255 1993 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms