Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm13169-201ENSMUST00000122090 1459 ntBASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Trbv31-201ENSMUST00000103300 334 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Arhgef9-201ENSMUST00000113873 2117 ntTSL 5 BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Gm5909-201ENSMUST00000119768 1281 ntBASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Prelid3b-203ENSMUST00000120822 622 ntTSL 3 BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Gng5-ps-201ENSMUST00000120931 205 ntBASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Gm15540-201ENSMUST00000136052 674 ntTSL 2 BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Gm5860-201ENSMUST00000137810 1028 ntTSL 2 BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Gm16322-202ENSMUST00000141275 700 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Gm23582-201ENSMUST00000158530 139 ntBASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Gm17019-201ENSMUST00000167908 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Ppy-202ENSMUST00000170554 487 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Gm37688-201ENSMUST00000195195 465 ntBASIC14.85□□□□□ -0.03
Usp40Q8BWR4 CT025603.1-201ENSMUST00000224040 448 ntBASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Gimap7-201ENSMUST00000052503 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Ifne-201ENSMUST00000056014 664 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Gm7735-201ENSMUST00000089098 159 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Ank2-214ENSMUST00000182547 2428 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC14.85□□□□□ -0.03
Usp40Q8BWR4 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Dhdds-209ENSMUST00000144668 3219 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Vmn2r18-201ENSMUST00000165928 2367 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 5730422E09Rik-201ENSMUST00000180733 1740 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Atp5g1-201ENSMUST00000090541 4715 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Rasgrp1-204ENSMUST00000173252 1750 ntTSL 5 BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Sfxn5-204ENSMUST00000113788 514 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Gm16263-201ENSMUST00000144680 502 ntTSL 3 BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Ttc39b-206ENSMUST00000148811 727 ntTSL 3 BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Gm16538-201ENSMUST00000162407 442 ntTSL 2 BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Tex33-202ENSMUST00000165170 1072 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Ly6i-202ENSMUST00000166694 620 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Gast-201ENSMUST00000017309 460 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Rpl15-ps2-201ENSMUST00000184247 613 ntBASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Psmb6-ps2-201ENSMUST00000187074 705 ntBASIC14.84□□□□□ -0.03
Usp40Q8BWR4 AC134913.2-201ENSMUST00000225017 771 ntBASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Tex33-201ENSMUST00000074380 1147 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Mir194-2-201ENSMUST00000083648 86 ntBASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Tmem108-203ENSMUST00000189066 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 3000002C10Rik-201ENSMUST00000125451 1614 ntTSL 2 BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Fastkd5-201ENSMUST00000110262 3015 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Usp40Q8BWR4 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Usp40Q8BWR4 Gm26586-201ENSMUST00000181918 1745 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Usp40Q8BWR4 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC14.83□□□□□ -0.03
Usp40Q8BWR4 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Usp40Q8BWR4 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Usp40Q8BWR4 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
Usp40Q8BWR4 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Gm28624-201ENSMUST00000186430 2131 ntBASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Ighv1-12-201ENSMUST00000103500 294 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 1700025C18Rik-201ENSMUST00000109304 702 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Tprkb-204ENSMUST00000113752 749 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Gm15707-201ENSMUST00000118804 996 ntBASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Aknaos-201ENSMUST00000144095 1104 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Gm24078-201ENSMUST00000158184 103 ntBASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Gm16226-204ENSMUST00000162639 423 ntTSL 3 BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Gm21958-201ENSMUST00000178832 648 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Gm7765-201ENSMUST00000182585 974 ntBASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Zcwpw2-203ENSMUST00000187803 372 ntBASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Gm38038-201ENSMUST00000193803 259 ntBASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Pcdh7-207ENSMUST00000199310 659 ntTSL 2 BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Gm18123-201ENSMUST00000210874 822 ntBASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Gm18122-201ENSMUST00000211390 904 ntBASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Gm3318-201ENSMUST00000217604 1183 ntBASIC14.83□□□□□ -0.04
Usp40Q8BWR4 AC107752.1-201ENSMUST00000219362 469 ntBASIC14.83□□□□□ -0.04
Usp40Q8BWR4 CT030035.1-201ENSMUST00000223964 935 ntBASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Rps9-201ENSMUST00000006496 751 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Rps3a3-201ENSMUST00000074680 795 ntBASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Rps8-ps4-201ENSMUST00000092523 612 ntBASIC14.83□□□□□ -0.04
Usp40Q8BWR4 9130227L01Rik-202ENSMUST00000189293 1906 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Gm14025-201ENSMUST00000145798 4242 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Mylk3-202ENSMUST00000121972 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Usp40Q8BWR4 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 67.4 ms