Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Msrb1-202ENSMUST00000115262 886 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Gm11473-201ENSMUST00000118980 359 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Gm13281-201ENSMUST00000120871 567 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Gm14176-201ENSMUST00000121302 477 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Gm12950-201ENSMUST00000121683 417 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Platr20-202ENSMUST00000143209 937 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Tmem204-202ENSMUST00000153745 902 ntTSL 2 BASIC10.34□□□□□ -0.75
Cdx2P43241 Gm37988-201ENSMUST00000155020 825 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
Cdx2P43241 Gm5244-201ENSMUST00000164001 339 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Gm26716-201ENSMUST00000181227 415 ntTSL 5 BASIC10.34□□□□□ -0.75
Cdx2P43241 Gm4960-201ENSMUST00000182928 1001 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Gm29595-202ENSMUST00000187954 466 ntTSL 3 BASIC10.34□□□□□ -0.75
Cdx2P43241 A930036I15Rik-201ENSMUST00000196018 1045 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Gm7047-201ENSMUST00000196224 1063 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 AC124613.1-201ENSMUST00000198711 88 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Gm17936-201ENSMUST00000199413 988 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Gm5311-201ENSMUST00000203518 709 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Gm5738-201ENSMUST00000206016 779 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Gm31786-201ENSMUST00000212305 564 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 AC164087.2-201ENSMUST00000216206 1072 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Madcam1-202ENSMUST00000217748 944 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 AC125409.3-201ENSMUST00000223488 653 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Stpg4-201ENSMUST00000040609 847 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
Cdx2P43241 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
Cdx2P43241 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Gm26818-201ENSMUST00000181367 1360 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Klk1b5-201ENSMUST00000074359 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
Cdx2P43241 Mcemp1-201ENSMUST00000014118 1494 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Gm42833-201ENSMUST00000196019 2124 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC10.34□□□□□ -0.75
Cdx2P43241 Slc6a12-209ENSMUST00000171008 1674 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
Cdx2P43241 Gm10537-201ENSMUST00000192625 1698 ntBASIC10.34□□□□□ -0.75
Cdx2P43241 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx2P43241 Atp5g1-201ENSMUST00000090541 4715 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.75
Cdx2P43241 Fhl1-202ENSMUST00000114768 1337 ntTSL 5 BASIC10.33□□□□□ -0.76
Cdx2P43241 Gm13608-201ENSMUST00000121807 1406 ntBASIC10.33□□□□□ -0.76
Cdx2P43241 Cd247-205ENSMUST00000161559 1816 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC10.33□□□□□ -0.76
Cdx2P43241 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Cdx2P43241 Sept9-205ENSMUST00000106354 3869 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Cdx2P43241 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC10.33□□□□□ -0.76
Cdx2P43241 BC052040-201ENSMUST00000110918 2735 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Gm5148-203ENSMUST00000108105 1282 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Gm11465-201ENSMUST00000127942 435 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Gm6425-201ENSMUST00000136332 790 ntBASIC10.33□□□□□ -0.76
Cdx2P43241 Eif4e1b-210ENSMUST00000152204 859 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Gm25394-201ENSMUST00000157338 133 ntBASIC10.33□□□□□ -0.76
Cdx2P43241 Gm24346-201ENSMUST00000158712 194 ntBASIC10.33□□□□□ -0.76
Cdx2P43241 Gm26875-201ENSMUST00000181006 950 ntBASIC10.33□□□□□ -0.76
Cdx2P43241 Gm26943-201ENSMUST00000182295 957 ntBASIC10.33□□□□□ -0.76
Cdx2P43241 Psmb6-ps2-201ENSMUST00000187074 705 ntBASIC10.33□□□□□ -0.76
Cdx2P43241 4930444A19Rik-202ENSMUST00000190007 633 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Gm28505-201ENSMUST00000190466 680 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Tcstv1-202ENSMUST00000190512 875 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 1700012J22Rik-201ENSMUST00000193492 830 ntBASIC10.33□□□□□ -0.76
Cdx2P43241 Gm38233-201ENSMUST00000194259 807 ntBASIC10.33□□□□□ -0.76
Cdx2P43241 Gm37860-201ENSMUST00000195380 1034 ntBASIC10.33□□□□□ -0.76
Cdx2P43241 Gm45783-201ENSMUST00000210877 656 ntAPPRIS P1 TSL 3 BASIC10.33□□□□□ -0.76
Cdx2P43241 Gm4032-203ENSMUST00000211600 531 ntTSL 3 BASIC10.33□□□□□ -0.76
Cdx2P43241 Gm19990-201ENSMUST00000219468 1224 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 AC102569.1-201ENSMUST00000221563 685 ntBASIC10.33□□□□□ -0.76
Cdx2P43241 AC134860.2-201ENSMUST00000225277 1036 ntBASIC10.33□□□□□ -0.76
Cdx2P43241 Lcn3-201ENSMUST00000028304 684 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Ssna1-201ENSMUST00000028342 862 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Gzmk-201ENSMUST00000038212 1028 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Gm8730-201ENSMUST00000076373 954 ntBASIC10.33□□□□□ -0.76
Cdx2P43241 Gemin8-203ENSMUST00000096252 1039 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Atxn7l1-203ENSMUST00000110824 1675 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 4930517G19Rik-201ENSMUST00000206152 1676 ntBASIC10.33□□□□□ -0.76
Cdx2P43241 Pced1b-204ENSMUST00000228521 1790 ntAPPRIS P1 BASIC10.33□□□□□ -0.76
Cdx2P43241 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Prss57-201ENSMUST00000020573 2693 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC10.33□□□□□ -0.76
Cdx2P43241 Ndst1-201ENSMUST00000169273 6070 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Nhlrc3-201ENSMUST00000056749 5047 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Cdx2P43241 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Cdx2P43241 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 Dcun1d2-206ENSMUST00000203604 2112 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx2P43241 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms