Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Myc-206ENSMUST00000167731 1821 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Gm14650-201ENSMUST00000120400 889 ntBASIC12.72□□□□□ -0.37
Scn11aQ9R053 Eif4e1b-210ENSMUST00000152204 859 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Gm17733-201ENSMUST00000181883 1048 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Gm21149-201ENSMUST00000197995 1212 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Fkbp6-203ENSMUST00000201784 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 AC166902.2-202ENSMUST00000213191 1038 ntTSL 5 BASIC12.72□□□□□ -0.37
Scn11aQ9R053 AC124503.1-201ENSMUST00000218524 526 ntTSL 3 BASIC12.72□□□□□ -0.37
Scn11aQ9R053 AC133496.1-201ENSMUST00000223891 743 ntBASIC12.72□□□□□ -0.37
Scn11aQ9R053 AC154433.1-201ENSMUST00000224401 1183 ntBASIC12.72□□□□□ -0.37
Scn11aQ9R053 Olfr761-201ENSMUST00000049620 1029 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Olfr127-201ENSMUST00000076331 1095 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Eif2ak4-203ENSMUST00000110869 1715 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Txk-203ENSMUST00000197313 2190 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Gm5174-201ENSMUST00000171131 1423 ntBASIC12.72□□□□□ -0.37
Scn11aQ9R053 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Ccdc42-202ENSMUST00000102612 785 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Spaca9-201ENSMUST00000102877 671 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Gm5148-203ENSMUST00000108105 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Gm14227-201ENSMUST00000119431 629 ntBASIC12.71□□□□□ -0.37
Scn11aQ9R053 1700001J04Rik-202ENSMUST00000154037 743 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Cpsf4l-201ENSMUST00000018871 1235 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Gm7539-201ENSMUST00000189789 630 ntBASIC12.71□□□□□ -0.37
Scn11aQ9R053 Gm37944-201ENSMUST00000194233 414 ntBASIC12.71□□□□□ -0.37
Scn11aQ9R053 Gm9523-201ENSMUST00000199146 1159 ntBASIC12.71□□□□□ -0.37
Scn11aQ9R053 Gm7727-201ENSMUST00000219830 671 ntBASIC12.71□□□□□ -0.37
Scn11aQ9R053 Gm19605-205ENSMUST00000221712 677 ntTSL 3 BASIC12.71□□□□□ -0.37
Scn11aQ9R053 CT009550.1-201ENSMUST00000225750 864 ntBASIC12.71□□□□□ -0.37
Scn11aQ9R053 Cacna2d3-208ENSMUST00000225985 918 ntBASIC12.71□□□□□ -0.37
Scn11aQ9R053 Olfr169-201ENSMUST00000090062 942 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Lztr1-202ENSMUST00000115681 3394 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Zeb2-203ENSMUST00000076836 3913 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Dcstamp-201ENSMUST00000022913 1997 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Ccdc130-202ENSMUST00000098578 2119 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Gm10699-201ENSMUST00000098916 2130 ntBASIC12.71□□□□□ -0.37
Scn11aQ9R053 Exosc9-201ENSMUST00000029269 1617 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Scn11aQ9R053 Mkrn1-204ENSMUST00000114823 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Nos1ap-203ENSMUST00000160466 1533 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Tnnt3-203ENSMUST00000105941 747 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Tnnt3-204ENSMUST00000105942 720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Tnnt3-205ENSMUST00000105943 720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Tnnt3-207ENSMUST00000105945 747 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Tnnt3-208ENSMUST00000105946 765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Gm14370-201ENSMUST00000122460 868 ntBASIC12.71□□□□□ -0.38
Scn11aQ9R053 Rab7b-205ENSMUST00000136247 497 ntTSL 5 BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Gm15273-201ENSMUST00000142302 868 ntBASIC12.71□□□□□ -0.38
Scn11aQ9R053 Gm7023-201ENSMUST00000147295 868 ntBASIC12.71□□□□□ -0.38
Scn11aQ9R053 Gm14357-201ENSMUST00000178352 868 ntBASIC12.71□□□□□ -0.38
Scn11aQ9R053 Gm14361-201ENSMUST00000178547 868 ntBASIC12.71□□□□□ -0.38
Scn11aQ9R053 Gm14348-201ENSMUST00000179183 868 ntBASIC12.71□□□□□ -0.38
Scn11aQ9R053 Gm4812-201ENSMUST00000182847 993 ntBASIC12.71□□□□□ -0.38
Scn11aQ9R053 Gm7815-201ENSMUST00000196104 832 ntBASIC12.71□□□□□ -0.38
Scn11aQ9R053 Gm31378-201ENSMUST00000213538 267 ntTSL 5 BASIC12.71□□□□□ -0.38
Scn11aQ9R053 AC155300.1-201ENSMUST00000219134 480 ntBASIC12.71□□□□□ -0.38
Scn11aQ9R053 Gm34667-201ENSMUST00000222974 1258 ntTSL 5 BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Vmn1r212-201ENSMUST00000095960 1164 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Mdh1-201ENSMUST00000102874 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Scn11aQ9R053 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Pde6c-202ENSMUST00000112329 2895 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Rint1-203ENSMUST00000115113 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Tmprss11c-201ENSMUST00000059424 1615 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 4930433J02Rik-201ENSMUST00000194719 1386 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Gm8752-201ENSMUST00000173427 1694 ntBASIC12.7□□□□□ -0.38
Scn11aQ9R053 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Dytn-201ENSMUST00000090313 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Gm9095-201ENSMUST00000117607 881 ntBASIC12.7□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms