Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Acsm2-202ENSMUST00000098084 2099 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Gm12333-201ENSMUST00000155508 2669 ntTSL 3 BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Pck1-201ENSMUST00000029017 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Slc10a7-201ENSMUST00000034111 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Snord17-201ENSMUST00000104526 238 ntBASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Gm8111-201ENSMUST00000117659 987 ntBASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Gm37638-201ENSMUST00000194337 1123 ntBASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Gm45592-201ENSMUST00000209605 1043 ntBASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Gm7082-201ENSMUST00000209880 969 ntBASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Mt1-202ENSMUST00000211807 1085 ntBASIC12.71□□□□□ -0.37
Vps53Q8CCB4 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 4930555K19Rik-201ENSMUST00000060066 171 ntBASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Slc6a2-201ENSMUST00000072939 6187 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps53Q8CCB4 Dido1-204ENSMUST00000103055 4613 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Vps53Q8CCB4 Usp44-202ENSMUST00000216224 2449 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Vps53Q8CCB4 Gm19972-201ENSMUST00000218180 5664 ntBASIC12.71□□□□□ -0.38
Vps53Q8CCB4 Sez6l-206ENSMUST00000212758 2664 ntTSL 5 BASIC12.71□□□□□ -0.38
Vps53Q8CCB4 Asb15-201ENSMUST00000031696 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vps53Q8CCB4 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vps53Q8CCB4 Gm11470-201ENSMUST00000118868 1475 ntBASIC12.71□□□□□ -0.38
Vps53Q8CCB4 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vps53Q8CCB4 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vps53Q8CCB4 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC12.71□□□□□ -0.38
Vps53Q8CCB4 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
Vps53Q8CCB4 Zfp1-202ENSMUST00000211926 1409 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vps53Q8CCB4 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Exoc3l4-201ENSMUST00000072646 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Plekhg5-202ENSMUST00000105661 3842 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Elf2-206ENSMUST00000163748 2656 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Exosc10-202ENSMUST00000076022 2682 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Ppp1r26-201ENSMUST00000040324 5466 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Usp47-206ENSMUST00000215510 4697 ntTSL 5 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Arfgef3-201ENSMUST00000019999 5606 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm14274-201ENSMUST00000117182 615 ntBASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm12218-201ENSMUST00000117666 399 ntBASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm7541-201ENSMUST00000118361 535 ntBASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm16219-201ENSMUST00000120096 274 ntBASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm11884-201ENSMUST00000131639 641 ntTSL 5 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm25554-201ENSMUST00000158075 113 ntBASIC12.7□□□□□ -0.38
Vps53Q8CCB4 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm18201-201ENSMUST00000174735 875 ntBASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Malat1-205ENSMUST00000174808 656 ntTSL 2 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm16938-201ENSMUST00000180517 464 ntTSL 5 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm43671-201ENSMUST00000200422 433 ntBASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm3433-201ENSMUST00000210149 1058 ntBASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm6390-201ENSMUST00000215034 589 ntBASIC12.7□□□□□ -0.38
Vps53Q8CCB4 AC112146.1-201ENSMUST00000221641 733 ntTSL 3 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 AC153152.3-201ENSMUST00000222188 1135 ntBASIC12.7□□□□□ -0.38
Vps53Q8CCB4 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm18294-201ENSMUST00000176980 1748 ntBASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Slc38a4-202ENSMUST00000166223 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Gm17281-201ENSMUST00000180732 3589 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Slc12a8-203ENSMUST00000119173 2382 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 4930465M20Rik-201ENSMUST00000130564 1446 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 E330011O21Rik-202ENSMUST00000209498 1403 ntTSL 5 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Fyb2-202ENSMUST00000106804 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 6430573F11Rik-203ENSMUST00000147525 5820 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Lamb1-205ENSMUST00000169088 5557 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Vps53Q8CCB4 Msh3-201ENSMUST00000022220 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps53Q8CCB4 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps53Q8CCB4 Gm15983-201ENSMUST00000140000 4814 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Vps53Q8CCB4 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Vps53Q8CCB4 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Vps53Q8CCB4 Krt7-201ENSMUST00000068904 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps53Q8CCB4 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps53Q8CCB4 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
Vps53Q8CCB4 Fastkd5-201ENSMUST00000110262 3015 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
Vps53Q8CCB4 Cer1-201ENSMUST00000048430 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms