Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col1a1P11087 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Col1a1P11087 Gab3-202ENSMUST00000114104 1705 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Col1a1P11087 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Col1a1P11087 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 Lrrc61-201ENSMUST00000101436 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 AC116596.1-201ENSMUST00000228112 1762 ntBASIC12.62□□□□□ -0.39
Col1a1P11087 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Col1a1P11087 A930006I01Rik-201ENSMUST00000139065 2229 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 Lrrc4-201ENSMUST00000062304 3615 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Col1a1P11087 Ighv5-15-201ENSMUST00000103457 350 ntAPPRIS ALT2 BASIC12.62□□□□□ -0.39
Col1a1P11087 Mrps33-202ENSMUST00000114797 500 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 Gm3898-201ENSMUST00000180221 613 ntTSL 5 BASIC12.62□□□□□ -0.39
Col1a1P11087 Krtap6-3-202ENSMUST00000185581 520 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Col1a1P11087 Gm29669-201ENSMUST00000188605 881 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 AC159006.3-201ENSMUST00000226918 664 ntBASIC12.62□□□□□ -0.39
Col1a1P11087 Krtap6-3-201ENSMUST00000079151 444 ntBASIC12.62□□□□□ -0.39
Col1a1P11087 Olfr1219-201ENSMUST00000099797 936 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Col1a1P11087 Prl8a1-202ENSMUST00000095926 1682 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 Gm45206-201ENSMUST00000206885 2285 ntBASIC12.62□□□□□ -0.39
Col1a1P11087 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 BC052040-201ENSMUST00000110918 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 Gsdma3-202ENSMUST00000107508 1587 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Col1a1P11087 Lims1-201ENSMUST00000020077 1565 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col1a1P11087 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC12.62□□□□□ -0.39
Col1a1P11087 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC12.62□□□□□ -0.39
Col1a1P11087 AC149588.2-201ENSMUST00000228182 1859 ntBASIC12.61□□□□□ -0.39
Col1a1P11087 Gm9864-201ENSMUST00000090043 1656 ntBASIC12.61□□□□□ -0.39
Col1a1P11087 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Col1a1P11087 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC12.61□□□□□ -0.39
Col1a1P11087 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Zfat-205ENSMUST00000162173 3561 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Col1a1P11087 Gm24161-201ENSMUST00000104592 130 ntBASIC12.61□□□□□ -0.39
Col1a1P11087 Use1-203ENSMUST00000110054 973 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Ccdc32-203ENSMUST00000110834 828 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Gm15132-201ENSMUST00000118581 652 ntBASIC12.61□□□□□ -0.39
Col1a1P11087 Gm13758-201ENSMUST00000118699 743 ntBASIC12.61□□□□□ -0.39
Col1a1P11087 Gm8809-201ENSMUST00000119367 743 ntBASIC12.61□□□□□ -0.39
Col1a1P11087 Gm16193-201ENSMUST00000125903 778 ntTSL 3 BASIC12.61□□□□□ -0.39
Col1a1P11087 Gm13580-201ENSMUST00000131457 566 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Gm14341-201ENSMUST00000154616 667 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 C130080G10Rik-204ENSMUST00000155185 954 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Gm25154-201ENSMUST00000157123 119 ntBASIC12.61□□□□□ -0.39
Col1a1P11087 Gm16226-204ENSMUST00000162639 423 ntTSL 3 BASIC12.61□□□□□ -0.39
Col1a1P11087 Gm29283-201ENSMUST00000187394 288 ntTSL 5 BASIC12.61□□□□□ -0.39
Col1a1P11087 Gm28499-201ENSMUST00000191576 666 ntTSL 2 BASIC12.61□□□□□ -0.39
Col1a1P11087 Gm38145-201ENSMUST00000192319 693 ntBASIC12.61□□□□□ -0.39
Col1a1P11087 Gm33969-201ENSMUST00000197615 388 ntTSL 3 BASIC12.61□□□□□ -0.39
Col1a1P11087 Fkbp6-203ENSMUST00000201784 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Gm8268-201ENSMUST00000209683 458 ntBASIC12.61□□□□□ -0.39
Col1a1P11087 Scmh1-203ENSMUST00000106298 1995 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Ccdc136-207ENSMUST00000154619 3356 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Col1a1P11087 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Irf9-202ENSMUST00000130697 2459 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Col1a1P11087 F730016J06Rik-201ENSMUST00000126140 1344 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Bgn-207ENSMUST00000169489 1574 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Col1a1P11087 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Col1a1P11087 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Col1a1P11087 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC12.61□□□□□ -0.39
Col1a1P11087 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col1a1P11087 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col1a1P11087 A930016O22Rik-202ENSMUST00000208685 2349 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col1a1P11087 Hgs-203ENSMUST00000106205 2898 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Col1a1P11087 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col1a1P11087 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Col1a1P11087 Armcx3-203ENSMUST00000086884 3488 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Col1a1P11087 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col1a1P11087 Gm13326-201ENSMUST00000118730 1011 ntBASIC12.6□□□□□ -0.39
Col1a1P11087 Gm16480-201ENSMUST00000120439 832 ntBASIC12.6□□□□□ -0.39
Col1a1P11087 Olfr333-ps1-201ENSMUST00000122311 940 ntBASIC12.6□□□□□ -0.39
Col1a1P11087 Gm44805-201ENSMUST00000127648 765 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Col1a1P11087 2810403D21Rik-204ENSMUST00000144421 747 ntTSL 3 BASIC12.6□□□□□ -0.39
Col1a1P11087 Gm15419-201ENSMUST00000148654 743 ntTSL 3 BASIC12.6□□□□□ -0.39
Col1a1P11087 Gm12972-201ENSMUST00000152986 1006 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col1a1P11087 Gm23521-201ENSMUST00000177845 110 ntBASIC12.6□□□□□ -0.39
Col1a1P11087 Tmem108-203ENSMUST00000189066 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col1a1P11087 Gm31466-201ENSMUST00000195457 916 ntTSL 3 BASIC12.6□□□□□ -0.39
Col1a1P11087 6720482G16Rik-201ENSMUST00000199552 1192 ntBASIC12.6□□□□□ -0.39
Col1a1P11087 Gm42588-201ENSMUST00000200538 1297 ntBASIC12.6□□□□□ -0.39
Col1a1P11087 Rassf6-205ENSMUST00000202704 1178 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
Col1a1P11087 Acsm5-204ENSMUST00000207387 1130 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col1a1P11087 Gm3889-201ENSMUST00000212467 612 ntBASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 58.3 ms