Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Fam90a1b-201ENSMUST00000044989 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Hmg20a-206ENSMUST00000217518 2468 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Frmd4a-216ENSMUST00000176828 4355 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Fcgr2b-204ENSMUST00000159969 1578 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Gpr143-201ENSMUST00000026383 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Mobp-202ENSMUST00000093773 3286 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Kcne2-202ENSMUST00000113971 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Sptbn5-204ENSMUST00000156159 3625 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC13.06□□□□□ -0.32
Vps54Q5SPW0 Sipa1l2-202ENSMUST00000212168 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Ppp1r32-201ENSMUST00000038842 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Azin1-203ENSMUST00000110329 4217 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Pced1b-204ENSMUST00000228521 1790 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Mrpl55-205ENSMUST00000108787 718 ntTSL 2 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Gm3409-202ENSMUST00000110599 1154 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Styxl1-203ENSMUST00000111162 726 ntTSL 5 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Syngr4-202ENSMUST00000120299 722 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Gm16587-201ENSMUST00000161943 863 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Has2os-202ENSMUST00000163314 633 ntTSL 3 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Rn7s6-201ENSMUST00000175005 291 ntBASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Gm3415-202ENSMUST00000179214 1154 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Gm42833-201ENSMUST00000196019 2124 ntBASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Gm42430-201ENSMUST00000197209 616 ntBASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Gm3409-203ENSMUST00000199142 1167 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Fgfbp1-203ENSMUST00000199894 1228 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Gm3402-203ENSMUST00000200228 1154 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Tcf25-210ENSMUST00000212880 827 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 AC102847.1-202ENSMUST00000226313 1245 ntBASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 AC154528.2-201ENSMUST00000228432 3023 ntBASIC13.05□□□□□ -0.32
Vps54Q5SPW0 C2-206ENSMUST00000152417 2157 ntTSL 5 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Lig3-210ENSMUST00000173347 3631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 F730016J06Rik-201ENSMUST00000126140 1344 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Gps2-202ENSMUST00000072581 1311 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Stat5a-202ENSMUST00000107356 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Fanca-202ENSMUST00000118395 3274 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Pigc-205ENSMUST00000193784 4207 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps54Q5SPW0 AA474408-201ENSMUST00000098110 3339 ntBASIC13.05□□□□□ -0.32
Vps54Q5SPW0 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Slc4a9-201ENSMUST00000074298 2714 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Gm10436-202ENSMUST00000220521 1788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Edn1-201ENSMUST00000021796 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Dhdds-209ENSMUST00000144668 3219 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Cxcl11-201ENSMUST00000077820 1581 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Pcdh20-202ENSMUST00000192557 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 4930412O13Rik-202ENSMUST00000114919 558 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Gm14234-201ENSMUST00000119539 845 ntBASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Saxo2-202ENSMUST00000126478 430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Gm22146-201ENSMUST00000157397 288 ntBASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Gm24328-201ENSMUST00000175104 67 ntBASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Gm26989-201ENSMUST00000182608 749 ntBASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Gm27441-201ENSMUST00000185000 105 ntBASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Tcstv1-202ENSMUST00000190512 875 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 P4htm-204ENSMUST00000193621 1297 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Gm37860-201ENSMUST00000195380 1034 ntBASIC13.04□□□□□ -0.32
Vps54Q5SPW0 C230057A21Rik-202ENSMUST00000195781 600 ntTSL 3 BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Gm43506-201ENSMUST00000200675 753 ntBASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Ormdl2-203ENSMUST00000219215 1051 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 AC134601.2-201ENSMUST00000221071 130 ntBASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Txndc9-208ENSMUST00000195247 1699 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Olfr171-202ENSMUST00000205467 1406 ntAPPRIS ALT1 TSL 2 BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Arih2-201ENSMUST00000013338 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms