Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tubgcp6-202ENSMUST00000109353 7635 ntAPPRIS P2 TSL 5 BASIC8.95□□□□□ -0.98
Hmgb3O54879 Nudcd1-201ENSMUST00000038719 2600 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Gtf2a1-201ENSMUST00000021345 6064 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Lyrm9-203ENSMUST00000147875 8035 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Aoc1-201ENSMUST00000031835 2675 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Wwp2-204ENSMUST00000212205 2758 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Gm22133-201ENSMUST00000102082 109 ntBASIC8.95□□□□□ -0.98
Hmgb3O54879 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC8.95□□□□□ -0.98
Hmgb3O54879 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC8.95□□□□□ -0.98
Hmgb3O54879 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC8.95□□□□□ -0.98
Hmgb3O54879 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
Hmgb3O54879 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Rprl1-202ENSMUST00000198476 238 ntBASIC8.95□□□□□ -0.98
Hmgb3O54879 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC8.95□□□□□ -0.98
Hmgb3O54879 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Gm17827-201ENSMUST00000211825 742 ntBASIC8.95□□□□□ -0.98
Hmgb3O54879 Olfr1227-ps1-201ENSMUST00000215627 928 ntBASIC8.95□□□□□ -0.98
Hmgb3O54879 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC8.95□□□□□ -0.98
Hmgb3O54879 Gm18165-201ENSMUST00000217426 928 ntBASIC8.95□□□□□ -0.98
Hmgb3O54879 AC161537.1-201ENSMUST00000226199 1015 ntBASIC8.95□□□□□ -0.98
Hmgb3O54879 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC8.95□□□□□ -0.98
Hmgb3O54879 Cux1-207ENSMUST00000176216 2821 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Adamtsl4-201ENSMUST00000015994 3856 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Gm10848-201ENSMUST00000192361 1811 ntTSL 2 BASIC8.95□□□□□ -0.98
Hmgb3O54879 Gm45828-201ENSMUST00000206938 1836 ntBASIC8.95□□□□□ -0.98
Hmgb3O54879 Kif2c-202ENSMUST00000106436 2378 ntAPPRIS ALT2 TSL 5 BASIC8.95□□□□□ -0.98
Hmgb3O54879 Gm8862-201ENSMUST00000198379 1346 ntBASIC8.95□□□□□ -0.98
Hmgb3O54879 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Atg4b-201ENSMUST00000027502 4173 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Tfdp1-204ENSMUST00000209885 2511 ntAPPRIS P3 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 2810454H06Rik-201ENSMUST00000189942 3148 ntBASIC8.95□□□□□ -0.98
Hmgb3O54879 Ndrg4-201ENSMUST00000041318 3101 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Mei4-203ENSMUST00000189832 2578 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 2900060N12Rik-201ENSMUST00000221412 3721 ntBASIC8.95□□□□□ -0.98
Hmgb3O54879 Lhfpl2-201ENSMUST00000054274 4348 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Prss57-201ENSMUST00000020573 2693 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Sept9-205ENSMUST00000106354 3869 ntAPPRIS ALT2 TSL 5 BASIC8.95□□□□□ -0.98
Hmgb3O54879 Cngb1-204ENSMUST00000121162 3336 ntAPPRIS ALT2 TSL 5 BASIC8.95□□□□□ -0.98
Hmgb3O54879 Gm9072-201ENSMUST00000218390 1514 ntBASIC8.95□□□□□ -0.98
Hmgb3O54879 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC8.95□□□□□ -0.98
Hmgb3O54879 Gtf2i-223ENSMUST00000174513 4021 ntAPPRIS ALT2 TSL 2 BASIC8.95□□□□□ -0.98
Hmgb3O54879 Zbtb26-201ENSMUST00000067043 5267 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Nek4-203ENSMUST00000226551 4098 ntAPPRIS ALT2 BASIC8.95□□□□□ -0.98
Hmgb3O54879 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Mgme1-201ENSMUST00000028910 2840 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Etfbkmt-209ENSMUST00000179873 1576 ntAPPRIS P1 TSL 3 BASIC8.95□□□□□ -0.98
Hmgb3O54879 Nudt13-207ENSMUST00000224311 1574 ntBASIC8.95□□□□□ -0.98
Hmgb3O54879 Nanog-201ENSMUST00000012540 2211 ntAPPRIS P3 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Map3k19-205ENSMUST00000208183 4865 ntAPPRIS ALT2 TSL 5 BASIC8.94□□□□□ -0.98
Hmgb3O54879 Trpc6-202ENSMUST00000214596 2913 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Frem1-208ENSMUST00000170248 9527 ntAPPRIS ALT2 TSL 5 BASIC8.94□□□□□ -0.98
Hmgb3O54879 Tbc1d24-202ENSMUST00000040474 6269 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Qrfpr-203ENSMUST00000197447 1690 ntTSL 5 BASIC8.94□□□□□ -0.98
Hmgb3O54879 Tulp2-210ENSMUST00000210868 1664 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Vil1-201ENSMUST00000027366 3124 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Cdkn1b-202ENSMUST00000067327 4552 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Nrros-204ENSMUST00000126869 2540 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Sfi1-202ENSMUST00000081318 3969 ntAPPRIS P2 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Gabrr2-201ENSMUST00000024035 1820 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Scnn1a-206ENSMUST00000176655 3354 ntAPPRIS ALT2 TSL 5 BASIC8.94□□□□□ -0.98
Hmgb3O54879 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Gm35507-201ENSMUST00000197932 2761 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 EPPK1-201ENSMUST00000226781 12325 ntAPPRIS P1 BASIC8.94□□□□□ -0.98
Hmgb3O54879 Nfkbiz-204ENSMUST00000114458 3627 ntAPPRIS P3 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Cfi-201ENSMUST00000077918 2079 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Oxsm-201ENSMUST00000022311 3759 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Palm2-201ENSMUST00000102904 2958 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC8.94□□□□□ -0.98
Hmgb3O54879 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC8.94□□□□□ -0.98
Hmgb3O54879 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Olfml3-204ENSMUST00000169286 874 ntBASIC8.94□□□□□ -0.98
Hmgb3O54879 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Ighv4-2-201ENSMUST00000192975 362 ntBASIC8.94□□□□□ -0.98
Hmgb3O54879 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC8.94□□□□□ -0.98
Hmgb3O54879 Olfr284-202ENSMUST00000206647 966 ntBASIC8.94□□□□□ -0.98
Hmgb3O54879 Cldnd2-202ENSMUST00000206839 583 ntAPPRIS P1 TSL 2 BASIC8.94□□□□□ -0.98
Hmgb3O54879 Gm45224-201ENSMUST00000208203 414 ntBASIC8.94□□□□□ -0.98
Hmgb3O54879 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC8.94□□□□□ -0.98
Hmgb3O54879 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC8.94□□□□□ -0.98
Hmgb3O54879 Gm19309-201ENSMUST00000218295 205 ntBASIC8.94□□□□□ -0.98
Hmgb3O54879 AC159205.5-202ENSMUST00000224849 386 ntBASIC8.94□□□□□ -0.98
Hmgb3O54879 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 D630029K05Rik-201ENSMUST00000033651 2133 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC8.94□□□□□ -0.98
Hmgb3O54879 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC8.94□□□□□ -0.98
Hmgb3O54879 Prpf40a-201ENSMUST00000076313 7374 ntAPPRIS P2 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms