Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm9701-201ENSMUST00000077976 427 ntBASIC12.76□□□□□ -0.37
Scn11aQ9R053 Tbata-202ENSMUST00000079235 696 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Sppl2c-201ENSMUST00000059448 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 AC158777.1-201ENSMUST00000226216 1724 ntBASIC12.76□□□□□ -0.37
Scn11aQ9R053 CT025678.1-201ENSMUST00000214795 2972 ntBASIC12.76□□□□□ -0.37
Scn11aQ9R053 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Dnaja1-201ENSMUST00000030118 3376 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Gm43625-201ENSMUST00000199177 1539 ntBASIC12.76□□□□□ -0.37
Scn11aQ9R053 Gm10537-201ENSMUST00000192625 1698 ntBASIC12.76□□□□□ -0.37
Scn11aQ9R053 Exoc4-203ENSMUST00000115080 2369 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Cfap54-201ENSMUST00000020200 2473 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 C2-206ENSMUST00000152417 2157 ntTSL 5 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Klra9-202ENSMUST00000112032 1279 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Ptpa-210ENSMUST00000136009 810 ntTSL 3 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 AC140314.1-201ENSMUST00000219549 554 ntBASIC12.76□□□□□ -0.37
Scn11aQ9R053 AC149294.3-201ENSMUST00000226888 732 ntBASIC12.76□□□□□ -0.37
Scn11aQ9R053 Rpl37-201ENSMUST00000045356 835 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Olfr1394-201ENSMUST00000052668 939 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Gm9531-201ENSMUST00000055820 638 ntTSL 3 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Klra9-201ENSMUST00000071554 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Olfr47-201ENSMUST00000078057 1059 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 D630029K05Rik-201ENSMUST00000033651 2133 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Azin1-203ENSMUST00000110329 4217 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 A1bg-201ENSMUST00000096418 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Plekhg5-203ENSMUST00000105662 3933 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scn11aQ9R053 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Mei4-203ENSMUST00000189832 2578 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Kyat1-201ENSMUST00000044038 1876 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Serpina1e-202ENSMUST00000122229 1575 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Gm10842-201ENSMUST00000100338 369 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Stmn3-201ENSMUST00000103045 1136 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Rab29-202ENSMUST00000112386 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Tpm1-205ENSMUST00000113685 1208 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Gm12489-201ENSMUST00000119364 148 ntBASIC12.75□□□□□ -0.37
Scn11aQ9R053 Gm11701-201ENSMUST00000121277 1142 ntBASIC12.75□□□□□ -0.37
Scn11aQ9R053 Mir3100-201ENSMUST00000174918 65 ntBASIC12.75□□□□□ -0.37
Scn11aQ9R053 Gm3115-202ENSMUST00000177660 618 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Gm6337-203ENSMUST00000177662 618 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Gm3727-202ENSMUST00000178251 618 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 AC241616.1-201ENSMUST00000213741 166 ntBASIC12.75□□□□□ -0.37
Scn11aQ9R053 CT030035.1-201ENSMUST00000223964 935 ntBASIC12.75□□□□□ -0.37
Scn11aQ9R053 Gal-201ENSMUST00000025842 712 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Tsga8-201ENSMUST00000049420 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Tceanc2-203ENSMUST00000058585 766 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Gm45675-201ENSMUST00000211202 3429 ntBASIC12.75□□□□□ -0.37
Scn11aQ9R053 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Med24-202ENSMUST00000100500 3133 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 2700038G22Rik-201ENSMUST00000181574 1375 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Cntn4-203ENSMUST00000113258 2464 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Scmh1-203ENSMUST00000106298 1995 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Galntl5-202ENSMUST00000114965 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Mcemp1-201ENSMUST00000014118 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Tpd52-202ENSMUST00000091354 2193 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 AC124561.1-202ENSMUST00000228652 1929 ntBASIC12.75□□□□□ -0.37
Scn11aQ9R053 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC12.75□□□□□ -0.37
Scn11aQ9R053 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Scn11aQ9R053 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Hyal2-206ENSMUST00000195681 2968 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm6713-201ENSMUST00000216137 1446 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Sept2-201ENSMUST00000027495 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 65 ms