Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 CT025681.1-201ENSMUST00000225453 1855 ntBASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Adgrl3-215ENSMUST00000120673 5178 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 2610028H24Rik-202ENSMUST00000105415 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Trim46-203ENSMUST00000107464 3252 ntTSL 5 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Gm3642-201ENSMUST00000166895 1762 ntAPPRIS P5 TSL 5 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Cpne9-201ENSMUST00000041203 2777 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Lcorl-205ENSMUST00000121573 2378 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Derl2-206ENSMUST00000143850 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Gm31108-201ENSMUST00000204101 1633 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Eps8l1-204ENSMUST00000163893 3868 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Pigb-206ENSMUST00000184035 3221 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Trak1-201ENSMUST00000045903 4827 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Gm12030-201ENSMUST00000121917 223 ntBASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Gm13709-201ENSMUST00000138573 614 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 4930571N24Rik-202ENSMUST00000142914 598 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Gm27191-201ENSMUST00000145973 448 ntTSL 3 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 A230006K03Rik-202ENSMUST00000154958 901 ntTSL 5 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Gm22379-201ENSMUST00000157480 131 ntBASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Gm16553-201ENSMUST00000160490 716 ntTSL 3 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Gm5778-201ENSMUST00000171003 1072 ntBASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Gm7255-201ENSMUST00000187371 908 ntBASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 CT030166.5-201ENSMUST00000222249 420 ntBASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 AC154435.1-201ENSMUST00000223938 959 ntBASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Htr1b-202ENSMUST00000183482 4724 ntAPPRIS P1 TSL 3 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Specc1l-204ENSMUST00000218766 4725 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Bcl2-202ENSMUST00000189999 2841 ntBASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Wdr19-204ENSMUST00000203653 6279 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Oplah-201ENSMUST00000023222 3970 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Fhitos-201ENSMUST00000160149 1511 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Aldoa-202ENSMUST00000087566 1549 ntTSL 5 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Ackr2-202ENSMUST00000214340 3015 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Man2b2-201ENSMUST00000031002 3330 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Kdelc1-201ENSMUST00000027213 1765 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Plekha6-204ENSMUST00000187285 5040 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Col6a4-201ENSMUST00000121963 7371 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Zfp606-202ENSMUST00000123589 3509 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Chrnb2-203ENSMUST00000200558 3482 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Shc1-210ENSMUST00000191485 3154 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Igf1-201ENSMUST00000062862 2292 ntTSL 2 BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 Cdc7-204ENSMUST00000118261 3129 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Upf3bQ3ULL6 3425401B19Rik-201ENSMUST00000096038 5547 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Pdp2-201ENSMUST00000059588 5692 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Edil3-202ENSMUST00000081769 5317 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 March1-207ENSMUST00000110258 2581 ntAPPRIS ALT1 TSL 5 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Art5-203ENSMUST00000106935 495 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Mrpl55-205ENSMUST00000108787 718 ntTSL 2 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Gm14807-201ENSMUST00000116640 983 ntBASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Thegl-203ENSMUST00000118941 746 ntTSL 3 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Gm13019-201ENSMUST00000120000 276 ntBASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Hyal1-203ENSMUST00000123005 843 ntTSL 3 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Gm16030-201ENSMUST00000159098 603 ntBASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Gm29431-201ENSMUST00000189848 449 ntTSL 5 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Gm38324-201ENSMUST00000194390 411 ntTSL 3 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Gm44753-202ENSMUST00000208297 562 ntTSL 5 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Gm45410-201ENSMUST00000211331 1093 ntBASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 CT025531.1-201ENSMUST00000214534 622 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 AC154461.3-201ENSMUST00000224831 573 ntBASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 AC115304.2-201ENSMUST00000226399 332 ntBASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Scgb2b2-201ENSMUST00000038835 520 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Lsm8-201ENSMUST00000056398 807 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Ptgfr-201ENSMUST00000029670 6624 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Anxa3-205ENSMUST00000198631 1523 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Oxct1-201ENSMUST00000110690 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Gm42427-201ENSMUST00000200473 5292 ntBASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Rasal1-201ENSMUST00000031606 3212 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Upf3bQ3ULL6 Fbxo40-201ENSMUST00000075869 5137 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms