Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm3372-201ENSMUST00000198806 1792 ntBASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 AW549877-201ENSMUST00000046633 5076 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Ccdc136-207ENSMUST00000154619 3356 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Ptpru-202ENSMUST00000097860 3365 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Sord-201ENSMUST00000110551 2352 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Tubgcp6-201ENSMUST00000041656 5357 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Vwa7-202ENSMUST00000172499 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm6641-201ENSMUST00000196100 1315 ntBASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gfra2-203ENSMUST00000227697 1323 ntBASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Il6st-201ENSMUST00000070731 5207 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Baiap3-206ENSMUST00000182825 3862 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Ccin-201ENSMUST00000095107 1941 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm11573-201ENSMUST00000119956 394 ntBASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm12791-201ENSMUST00000120788 655 ntBASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm22442-201ENSMUST00000157256 144 ntBASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm19927-201ENSMUST00000185792 781 ntBASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm29410-201ENSMUST00000188383 694 ntBASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm37638-201ENSMUST00000194337 1123 ntBASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm9884-201ENSMUST00000194343 1222 ntBASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 4930478P22Rik-202ENSMUST00000201921 723 ntTSL 3 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm42655-201ENSMUST00000202782 1134 ntBASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm44814-201ENSMUST00000207018 434 ntBASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Prrxl1-205ENSMUST00000228878 723 ntBASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Naca-201ENSMUST00000073868 885 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Thbs4-201ENSMUST00000022213 3198 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Gm43713-201ENSMUST00000198251 1896 ntTSL 5 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Pcnt-201ENSMUST00000001179 9331 ntAPPRIS P2 TSL 2 BASIC11.71□□□□□ -0.53
Upf3bQ3ULL6 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Upf3bQ3ULL6 Polr3c-201ENSMUST00000029741 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Upf3bQ3ULL6 Nfe2l1-212ENSMUST00000169828 3530 ntTSL 2 BASIC11.71□□□□□ -0.54
Upf3bQ3ULL6 Ceacam1-205ENSMUST00000206171 1722 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Upf3bQ3ULL6 Arid2-201ENSMUST00000096250 8507 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Upf3bQ3ULL6 Sh3gl2-201ENSMUST00000030212 2822 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Upf3bQ3ULL6 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Upf3bQ3ULL6 Tubb2b-201ENSMUST00000075774 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Upf3bQ3ULL6 Gm44106-201ENSMUST00000203153 1599 ntBASIC11.71□□□□□ -0.54
Upf3bQ3ULL6 Uba1-201ENSMUST00000001989 4071 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Upf3bQ3ULL6 Synpr-201ENSMUST00000070323 2541 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Tnip1-203ENSMUST00000102731 2973 ntAPPRIS P3 TSL 5 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Hrc-201ENSMUST00000085351 2411 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Gm19027-201ENSMUST00000187291 1355 ntBASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Cwc25-202ENSMUST00000107579 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Gm21759-201ENSMUST00000178345 1828 ntBASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Adck1-201ENSMUST00000101165 2158 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Tmcc2-201ENSMUST00000045473 3410 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Gm25063-201ENSMUST00000104666 94 ntBASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Gm9673-201ENSMUST00000119287 781 ntBASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Gm12136-201ENSMUST00000120460 1209 ntBASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Gm15486-201ENSMUST00000135147 604 ntTSL 3 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Mipep-ps-201ENSMUST00000177439 291 ntBASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Gm3726-201ENSMUST00000203110 785 ntBASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Gm9139-201ENSMUST00000218817 700 ntBASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 AC167364.1-201ENSMUST00000221495 784 ntTSL 5 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Olfr553-201ENSMUST00000098222 981 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Gpr158-201ENSMUST00000055946 7171 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Fam180a-201ENSMUST00000051176 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Pml-207ENSMUST00000135310 4413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Tmc5-203ENSMUST00000121715 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Aldoa-201ENSMUST00000032934 1511 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Bet1-201ENSMUST00000049166 1516 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Tardbp-209ENSMUST00000165113 6495 ntTSL 5 BASIC11.7□□□□□ -0.54
Upf3bQ3ULL6 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 73.8 ms