Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Gm12498-201ENSMUST00000138374 2458 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Cfap54-201ENSMUST00000020200 2473 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Trim28Q62318 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Slc10a1-201ENSMUST00000095572 1674 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Gm21142-201ENSMUST00000179999 2604 ntBASIC14.13□□□□□ -0.15
Trim28Q62318 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC14.13□□□□□ -0.15
Trim28Q62318 A830018L16Rik-209ENSMUST00000179089 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Lig3-210ENSMUST00000173347 3631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Kcne2-202ENSMUST00000113971 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Smim8-204ENSMUST00000108133 935 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Gm8482-201ENSMUST00000117972 471 ntBASIC14.13□□□□□ -0.15
Trim28Q62318 Gm13841-201ENSMUST00000118829 483 ntBASIC14.13□□□□□ -0.15
Trim28Q62318 Gm11449-201ENSMUST00000119175 476 ntBASIC14.13□□□□□ -0.15
Trim28Q62318 Gm3115-202ENSMUST00000177660 618 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Trim28Q62318 Gm6337-203ENSMUST00000177662 618 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Trim28Q62318 Gm3727-202ENSMUST00000178251 618 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Trim28Q62318 Tcstv1-201ENSMUST00000178510 1280 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Trim28Q62318 Gm8210-201ENSMUST00000178557 483 ntBASIC14.13□□□□□ -0.15
Trim28Q62318 Gm15454-201ENSMUST00000179718 483 ntBASIC14.13□□□□□ -0.15
Trim28Q62318 Gm27833-201ENSMUST00000184285 124 ntBASIC14.13□□□□□ -0.15
Trim28Q62318 Gm7539-201ENSMUST00000189789 630 ntBASIC14.13□□□□□ -0.15
Trim28Q62318 Gm44304-201ENSMUST00000200509 145 ntBASIC14.13□□□□□ -0.15
Trim28Q62318 Gm9204-201ENSMUST00000212641 947 ntBASIC14.13□□□□□ -0.15
Trim28Q62318 AC141884.2-201ENSMUST00000228811 775 ntBASIC14.13□□□□□ -0.15
Trim28Q62318 Defb29-201ENSMUST00000060598 462 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Olfr63-201ENSMUST00000067840 955 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Trim28Q62318 Gm6344-201ENSMUST00000075962 483 ntBASIC14.13□□□□□ -0.15
Trim28Q62318 Mrgpra1-201ENSMUST00000098438 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Zscan21-201ENSMUST00000062350 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Mirg-201ENSMUST00000181496 1906 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Ank2-214ENSMUST00000182547 2428 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Mettl8-201ENSMUST00000090849 1842 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Gsdma3-202ENSMUST00000107508 1587 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Trim28Q62318 Azin1-203ENSMUST00000110329 4217 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
Trim28Q62318 Ms4a7-203ENSMUST00000067532 1334 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Dclk2-209ENSMUST00000195561 3486 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Trim28Q62318 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim28Q62318 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Kcnmb3-201ENSMUST00000164954 1715 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Trim28Q62318 Exoc4-203ENSMUST00000115080 2369 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Sh3d21-201ENSMUST00000094760 1859 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Arhgap24-203ENSMUST00000094559 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC14.12□□□□□ -0.15
Trim28Q62318 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 C2-206ENSMUST00000152417 2157 ntTSL 5 BASIC14.12□□□□□ -0.15
Trim28Q62318 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Pole-202ENSMUST00000112481 1523 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Mab21l1-201ENSMUST00000075422 2492 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Trim28Q62318 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Gm11573-201ENSMUST00000119956 394 ntBASIC14.12□□□□□ -0.15
Trim28Q62318 Fxyd5-203ENSMUST00000159924 805 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
Trim28Q62318 Fxyd5-210ENSMUST00000162116 817 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
Trim28Q62318 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Cd9-ps-201ENSMUST00000174687 650 ntBASIC14.12□□□□□ -0.15
Trim28Q62318 Gm42617-201ENSMUST00000197640 1229 ntBASIC14.12□□□□□ -0.15
Trim28Q62318 Ghrl-203ENSMUST00000203588 237 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Gm5907-202ENSMUST00000210969 661 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Gm3926-201ENSMUST00000223378 1123 ntBASIC14.12□□□□□ -0.15
Trim28Q62318 Pla2g1b-201ENSMUST00000031495 557 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Mir194-2-201ENSMUST00000083648 86 ntBASIC14.12□□□□□ -0.15
Trim28Q62318 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Spns3-201ENSMUST00000021154 1804 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Sept9-203ENSMUST00000100193 2924 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Trim28Q62318 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Trim28Q62318 Gm38111-201ENSMUST00000194817 2741 ntBASIC14.12□□□□□ -0.15
Trim28Q62318 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Atp6v1a-201ENSMUST00000063661 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim28Q62318 Cep70-207ENSMUST00000190715 1768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim28Q62318 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim28Q62318 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trim28Q62318 Sh2d5-201ENSMUST00000105823 3529 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim28Q62318 Gm45041-201ENSMUST00000207366 3108 ntBASIC14.11□□□□□ -0.15
Trim28Q62318 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trim28Q62318 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim28Q62318 Tmc7-201ENSMUST00000044195 4546 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim28Q62318 Mapk8-202ENSMUST00000111942 927 ntTSL 5 BASIC14.11□□□□□ -0.15
Trim28Q62318 Paip2-202ENSMUST00000115734 815 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms