Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Satb1-204ENSMUST00000133574 3461 ntAPPRIS P2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Gm15352-201ENSMUST00000118696 270 ntBASIC9.91□□□□□ -0.82
Rfx3P48381 Gm15615-201ENSMUST00000118876 198 ntBASIC9.91□□□□□ -0.82
Rfx3P48381 Gm11331-201ENSMUST00000119764 288 ntBASIC9.91□□□□□ -0.82
Rfx3P48381 Mup-ps29-201ENSMUST00000122281 202 ntBASIC9.91□□□□□ -0.82
Rfx3P48381 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Gm18367-201ENSMUST00000176139 600 ntBASIC9.91□□□□□ -0.82
Rfx3P48381 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC9.91□□□□□ -0.82
Rfx3P48381 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC9.91□□□□□ -0.82
Rfx3P48381 Gm43058-201ENSMUST00000197645 625 ntBASIC9.91□□□□□ -0.82
Rfx3P48381 Gm43186-201ENSMUST00000198130 824 ntBASIC9.91□□□□□ -0.82
Rfx3P48381 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC9.91□□□□□ -0.82
Rfx3P48381 Gm7207-201ENSMUST00000211575 1067 ntBASIC9.91□□□□□ -0.82
Rfx3P48381 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC9.91□□□□□ -0.82
Rfx3P48381 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC9.91□□□□□ -0.82
Rfx3P48381 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC9.91□□□□□ -0.82
Rfx3P48381 AC159002.1-201ENSMUST00000226714 924 ntBASIC9.91□□□□□ -0.82
Rfx3P48381 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC9.91□□□□□ -0.82
Rfx3P48381 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Invs-201ENSMUST00000030029 5633 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Bloc1s5-201ENSMUST00000035899 5634 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 AI593442-201ENSMUST00000098768 5615 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Gmip-202ENSMUST00000123453 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Slc25a44-203ENSMUST00000193433 3429 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Hif1an-201ENSMUST00000040455 6194 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Hacl1-212ENSMUST00000167066 1566 ntTSL 5 BASIC9.91□□□□□ -0.82
Rfx3P48381 Pear1-201ENSMUST00000029714 4260 ntAPPRIS P1 TSL 5 BASIC9.91□□□□□ -0.82
Rfx3P48381 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC9.91□□□□□ -0.82
Rfx3P48381 Platr4-203ENSMUST00000199155 2161 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Syn2-203ENSMUST00000203450 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Sall2-201ENSMUST00000058326 5147 ntAPPRIS P2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Nrf1-208ENSMUST00000115208 2492 ntTSL 5 BASIC9.91□□□□□ -0.82
Rfx3P48381 Dab2-203ENSMUST00000110663 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Atcayos-203ENSMUST00000150782 3057 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Ank2-214ENSMUST00000182547 2428 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Ndrg4-203ENSMUST00000080666 2738 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Itgal-205ENSMUST00000170971 3662 ntAPPRIS ALT2 TSL 5 BASIC9.91□□□□□ -0.82
Rfx3P48381 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Rfx3P48381 Lrrc61-201ENSMUST00000101436 2674 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Msh3-202ENSMUST00000185852 3946 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
Rfx3P48381 Gm9915-201ENSMUST00000066196 1383 ntBASIC9.9□□□□□ -0.82
Rfx3P48381 Dhcr7-211ENSMUST00000207143 1652 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
Rfx3P48381 Rasgrp4-213ENSMUST00000204845 3182 ntTSL 5 BASIC9.9□□□□□ -0.82
Rfx3P48381 5033428I22Rik-204ENSMUST00000210633 6652 ntTSL 5 BASIC9.9□□□□□ -0.82
Rfx3P48381 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Wnk1-204ENSMUST00000088646 8364 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Shank2-205ENSMUST00000146006 7666 ntTSL 2 BASIC9.9□□□□□ -0.82
Rfx3P48381 Gpm6b-209ENSMUST00000112235 4480 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Gm43482-201ENSMUST00000202797 1861 ntBASIC9.9□□□□□ -0.82
Rfx3P48381 Slc6a2-201ENSMUST00000072939 6187 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Greb1l-201ENSMUST00000048977 8414 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
Rfx3P48381 Ccdc93-201ENSMUST00000036025 7274 ntAPPRIS P4 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Trgv2-201ENSMUST00000103563 491 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
Rfx3P48381 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
Rfx3P48381 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
Rfx3P48381 Gm9062-201ENSMUST00000117712 727 ntBASIC9.9□□□□□ -0.82
Rfx3P48381 Gm14740-201ENSMUST00000118538 1150 ntBASIC9.9□□□□□ -0.82
Rfx3P48381 Gm16219-201ENSMUST00000120096 274 ntBASIC9.9□□□□□ -0.82
Rfx3P48381 Gm11836-201ENSMUST00000121022 441 ntBASIC9.9□□□□□ -0.82
Rfx3P48381 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC9.9□□□□□ -0.82
Rfx3P48381 Gm22144-201ENSMUST00000157402 102 ntBASIC9.9□□□□□ -0.82
Rfx3P48381 Gm23699-201ENSMUST00000158835 135 ntBASIC9.9□□□□□ -0.82
Rfx3P48381 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC9.9□□□□□ -0.82
Rfx3P48381 Gm37301-201ENSMUST00000195412 568 ntBASIC9.9□□□□□ -0.82
Rfx3P48381 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
Rfx3P48381 Gm32111-201ENSMUST00000207689 846 ntBASIC9.9□□□□□ -0.82
Rfx3P48381 Gm8959-201ENSMUST00000213150 571 ntBASIC9.9□□□□□ -0.82
Rfx3P48381 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 AC166344.1-201ENSMUST00000223745 674 ntBASIC9.9□□□□□ -0.82
Rfx3P48381 Mon2-201ENSMUST00000037557 5511 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
Rfx3P48381 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Tor1aip2-201ENSMUST00000060404 5135 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Cnot8-202ENSMUST00000108843 2099 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Slc1a2-204ENSMUST00000111213 2093 ntTSL 5 BASIC9.9□□□□□ -0.82
Rfx3P48381 Arhgap33os-201ENSMUST00000124276 2648 ntTSL 2 BASIC9.9□□□□□ -0.82
Rfx3P48381 Ccdc33-201ENSMUST00000042205 2632 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Akap3-201ENSMUST00000095440 3153 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Tsc22d4-202ENSMUST00000100539 3983 ntAPPRIS P2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 Tcp10a-203ENSMUST00000129709 1778 ntAPPRIS P2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Rfx3P48381 AC166836.1-201ENSMUST00000219933 1795 ntBASIC9.9□□□□□ -0.82
Rfx3P48381 Lztr1-202ENSMUST00000115681 3394 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
Rfx3P48381 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.83
Rfx3P48381 Ppp4r1l-ps-202ENSMUST00000132669 2767 ntBASIC9.9□□□□□ -0.83
Rfx3P48381 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
Rfx3P48381 Caprin1-202ENSMUST00000111147 4069 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
Rfx3P48381 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC9.9□□□□□ -0.83
Rfx3P48381 Arih1-202ENSMUST00000165322 1431 ntTSL 5 BASIC9.9□□□□□ -0.83
Rfx3P48381 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.83
Rfx3P48381 6430573F11Rik-203ENSMUST00000147525 5820 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
Rfx3P48381 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
Rfx3P48381 Cdkl2-201ENSMUST00000069937 3976 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.83
Rfx3P48381 Nfe2l1-203ENSMUST00000107658 4219 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.83
Rfx3P48381 Atp5g1-201ENSMUST00000090541 4715 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
Retrieved 100 of 76,532 protein–RNA pairs in 65.1 ms