Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ckb-ps2-201ENSMUST00000198886 1001 ntBASIC12.72□□□□□ -0.37
Col1a1P11087 Gm5291-201ENSMUST00000201965 899 ntBASIC12.72□□□□□ -0.37
Col1a1P11087 Gm45308-201ENSMUST00000210610 415 ntBASIC12.72□□□□□ -0.37
Col1a1P11087 Tnfrsf14-205ENSMUST00000219534 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col1a1P11087 AC154347.2-201ENSMUST00000221223 715 ntTSL 3 BASIC12.72□□□□□ -0.37
Col1a1P11087 1700047G03Rik-205ENSMUST00000227822 1048 ntBASIC12.72□□□□□ -0.37
Col1a1P11087 Tnnt1-201ENSMUST00000071798 1027 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col1a1P11087 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col1a1P11087 Krt33b-201ENSMUST00000073890 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col1a1P11087 Gm43051-201ENSMUST00000201096 2678 ntBASIC12.71□□□□□ -0.37
Col1a1P11087 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC12.71□□□□□ -0.37
Col1a1P11087 Faf2-201ENSMUST00000026991 1748 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col1a1P11087 Gm5697-201ENSMUST00000122295 2482 ntBASIC12.71□□□□□ -0.37
Col1a1P11087 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col1a1P11087 Plekhg5-202ENSMUST00000105661 3842 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col1a1P11087 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Col1a1P11087 Gm44241-201ENSMUST00000203230 1662 ntBASIC12.71□□□□□ -0.37
Col1a1P11087 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col1a1P11087 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col1a1P11087 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col1a1P11087 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Col1a1P11087 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col1a1P11087 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col1a1P11087 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col1a1P11087 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col1a1P11087 Pom121l2-201ENSMUST00000017126 2960 ntAPPRIS P4 BASIC12.71□□□□□ -0.37
Col1a1P11087 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col1a1P11087 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col1a1P11087 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Col1a1P11087 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC12.71□□□□□ -0.38
Col1a1P11087 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col1a1P11087 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Col1a1P11087 Dytn-201ENSMUST00000090313 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col1a1P11087 Psd3-213ENSMUST00000212505 3253 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Col1a1P11087 Gm11929-201ENSMUST00000118175 945 ntBASIC12.71□□□□□ -0.38
Col1a1P11087 Shf-205ENSMUST00000121237 882 ntTSL 3 BASIC12.71□□□□□ -0.38
Col1a1P11087 4930529I22Rik-201ENSMUST00000131509 589 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Col1a1P11087 Gm14145-201ENSMUST00000133385 508 ntTSL 3 BASIC12.71□□□□□ -0.38
Col1a1P11087 Gm15472-201ENSMUST00000141652 847 ntTSL 5 BASIC12.71□□□□□ -0.38
Col1a1P11087 Glrx2-206ENSMUST00000145969 924 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col1a1P11087 Gm14146-201ENSMUST00000155885 508 ntTSL 5 BASIC12.71□□□□□ -0.38
Col1a1P11087 H2al1e-201ENSMUST00000178979 494 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
Col1a1P11087 Gm20474-201ENSMUST00000180089 596 ntBASIC12.71□□□□□ -0.38
Col1a1P11087 Gm18443-201ENSMUST00000185358 556 ntBASIC12.71□□□□□ -0.38
Col1a1P11087 H2al1b-201ENSMUST00000189531 495 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
Col1a1P11087 Gm28826-201ENSMUST00000190006 488 ntTSL 2 BASIC12.71□□□□□ -0.38
Col1a1P11087 Gm44196-203ENSMUST00000204359 1190 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Col1a1P11087 AC113291.2-201ENSMUST00000215490 1205 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Col1a1P11087 Gm19605-205ENSMUST00000221712 677 ntTSL 3 BASIC12.71□□□□□ -0.38
Col1a1P11087 Gm23458-201ENSMUST00000083257 169 ntBASIC12.71□□□□□ -0.38
Col1a1P11087 Olfr463-203ENSMUST00000217095 1977 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Col1a1P11087 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Slc17a8-202ENSMUST00000105295 1863 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Col1a1P11087 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 AC153380.1-201ENSMUST00000214959 2364 ntBASIC12.7□□□□□ -0.38
Col1a1P11087 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Gm38034-201ENSMUST00000193915 2069 ntBASIC12.7□□□□□ -0.38
Col1a1P11087 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Plac9b-201ENSMUST00000100809 388 ntTSL 2 BASIC12.7□□□□□ -0.38
Col1a1P11087 Spaca9-201ENSMUST00000102877 671 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Gm17225-201ENSMUST00000172051 497 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Vmn2r-ps13-201ENSMUST00000176920 606 ntBASIC12.7□□□□□ -0.38
Col1a1P11087 Gm26750-201ENSMUST00000181718 711 ntTSL 5 BASIC12.7□□□□□ -0.38
Col1a1P11087 Gm42617-201ENSMUST00000197640 1229 ntBASIC12.7□□□□□ -0.38
Col1a1P11087 9230114K14Rik-202ENSMUST00000198720 837 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Gm18466-201ENSMUST00000209147 499 ntBASIC12.7□□□□□ -0.38
Col1a1P11087 Gm18124-201ENSMUST00000210695 706 ntBASIC12.7□□□□□ -0.38
Col1a1P11087 Gm9790-201ENSMUST00000054148 288 ntBASIC12.7□□□□□ -0.38
Col1a1P11087 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC12.7□□□□□ -0.38
Col1a1P11087 Cdc42-202ENSMUST00000051477 2108 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Nanog-201ENSMUST00000012540 2211 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col1a1P11087 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Col1a1P11087 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC12.69□□□□□ -0.38
Col1a1P11087 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Gm7061-201ENSMUST00000118127 1416 ntBASIC12.69□□□□□ -0.38
Col1a1P11087 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC12.69□□□□□ -0.38
Col1a1P11087 Drc7-201ENSMUST00000058479 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC12.69□□□□□ -0.38
Col1a1P11087 Blvra-202ENSMUST00000110389 657 ntTSL 3 BASIC12.69□□□□□ -0.38
Col1a1P11087 Defa-ps17-201ENSMUST00000121849 171 ntBASIC12.69□□□□□ -0.38
Col1a1P11087 Mir3091-201ENSMUST00000175086 76 ntBASIC12.69□□□□□ -0.38
Col1a1P11087 2310034O05Rik-201ENSMUST00000185221 1107 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms