Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lima1Q9ERG0 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lima1Q9ERG0 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Lima1Q9ERG0 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lima1Q9ERG0 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Lima1Q9ERG0 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Lima1Q9ERG0 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lima1Q9ERG0 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lima1Q9ERG0 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lima1Q9ERG0 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Lima1Q9ERG0 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Lima1Q9ERG0 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.83■□□□□ 0.77
Lima1Q9ERG0 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Lima1Q9ERG0 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Lima1Q9ERG0 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC19.83■□□□□ 0.76
Lima1Q9ERG0 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Lima1Q9ERG0 Gm8093-201ENSMUST00000128935 1892 ntBASIC19.82■□□□□ 0.76
Lima1Q9ERG0 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Lima1Q9ERG0 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lima1Q9ERG0 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lima1Q9ERG0 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC19.82■□□□□ 0.76
Lima1Q9ERG0 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lima1Q9ERG0 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lima1Q9ERG0 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lima1Q9ERG0 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lima1Q9ERG0 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Lima1Q9ERG0 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.81■□□□□ 0.76
Lima1Q9ERG0 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lima1Q9ERG0 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lima1Q9ERG0 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lima1Q9ERG0 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lima1Q9ERG0 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Lima1Q9ERG0 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lima1Q9ERG0 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lima1Q9ERG0 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Lima1Q9ERG0 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Lima1Q9ERG0 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.8■□□□□ 0.76
Lima1Q9ERG0 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lima1Q9ERG0 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lima1Q9ERG0 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lima1Q9ERG0 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lima1Q9ERG0 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lima1Q9ERG0 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Lima1Q9ERG0 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.79■□□□□ 0.76
Lima1Q9ERG0 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lima1Q9ERG0 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.79■□□□□ 0.76
Lima1Q9ERG0 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.79■□□□□ 0.76
Lima1Q9ERG0 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lima1Q9ERG0 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lima1Q9ERG0 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lima1Q9ERG0 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Lima1Q9ERG0 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC19.79■□□□□ 0.76
Lima1Q9ERG0 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
Lima1Q9ERG0 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Lima1Q9ERG0 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lima1Q9ERG0 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.78■□□□□ 0.76
Lima1Q9ERG0 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lima1Q9ERG0 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.78■□□□□ 0.76
Lima1Q9ERG0 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Lima1Q9ERG0 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
Lima1Q9ERG0 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC19.77■□□□□ 0.76
Lima1Q9ERG0 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.77■□□□□ 0.76
Lima1Q9ERG0 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Lima1Q9ERG0 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lima1Q9ERG0 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.77■□□□□ 0.76
Lima1Q9ERG0 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lima1Q9ERG0 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Lima1Q9ERG0 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lima1Q9ERG0 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Lima1Q9ERG0 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.77■□□□□ 0.75
Lima1Q9ERG0 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.77■□□□□ 0.75
Lima1Q9ERG0 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
Lima1Q9ERG0 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lima1Q9ERG0 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lima1Q9ERG0 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lima1Q9ERG0 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC19.76■□□□□ 0.75
Lima1Q9ERG0 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lima1Q9ERG0 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lima1Q9ERG0 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lima1Q9ERG0 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lima1Q9ERG0 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lima1Q9ERG0 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Lima1Q9ERG0 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Lima1Q9ERG0 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lima1Q9ERG0 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Lima1Q9ERG0 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lima1Q9ERG0 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lima1Q9ERG0 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lima1Q9ERG0 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lima1Q9ERG0 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lima1Q9ERG0 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lima1Q9ERG0 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Lima1Q9ERG0 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lima1Q9ERG0 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lima1Q9ERG0 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lima1Q9ERG0 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lima1Q9ERG0 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.74■□□□□ 0.75
Lima1Q9ERG0 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lima1Q9ERG0 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lima1Q9ERG0 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms