Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx56Q9D0R4 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.17■□□□□ 0.98
Ddx56Q9D0R4 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx56Q9D0R4 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Ddx56Q9D0R4 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx56Q9D0R4 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.17■□□□□ 0.98
Ddx56Q9D0R4 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx56Q9D0R4 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
Ddx56Q9D0R4 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ddx56Q9D0R4 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC21.16■□□□□ 0.98
Ddx56Q9D0R4 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ddx56Q9D0R4 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ddx56Q9D0R4 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ddx56Q9D0R4 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ddx56Q9D0R4 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ddx56Q9D0R4 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC21.16■□□□□ 0.98
Ddx56Q9D0R4 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ddx56Q9D0R4 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ddx56Q9D0R4 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddx56Q9D0R4 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddx56Q9D0R4 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddx56Q9D0R4 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Ddx56Q9D0R4 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddx56Q9D0R4 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ddx56Q9D0R4 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddx56Q9D0R4 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ddx56Q9D0R4 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ddx56Q9D0R4 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ddx56Q9D0R4 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ddx56Q9D0R4 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
Ddx56Q9D0R4 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ddx56Q9D0R4 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ddx56Q9D0R4 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ddx56Q9D0R4 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC21.14■□□□□ 0.97
Ddx56Q9D0R4 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ddx56Q9D0R4 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Ddx56Q9D0R4 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ddx56Q9D0R4 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddx56Q9D0R4 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddx56Q9D0R4 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddx56Q9D0R4 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddx56Q9D0R4 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddx56Q9D0R4 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Ddx56Q9D0R4 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddx56Q9D0R4 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddx56Q9D0R4 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ddx56Q9D0R4 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Ddx56Q9D0R4 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddx56Q9D0R4 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC21.12■□□□□ 0.97
Ddx56Q9D0R4 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC21.12■□□□□ 0.97
Ddx56Q9D0R4 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ddx56Q9D0R4 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddx56Q9D0R4 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Ddx56Q9D0R4 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ddx56Q9D0R4 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddx56Q9D0R4 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Ddx56Q9D0R4 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddx56Q9D0R4 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddx56Q9D0R4 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddx56Q9D0R4 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Ddx56Q9D0R4 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddx56Q9D0R4 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddx56Q9D0R4 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Ddx56Q9D0R4 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Ddx56Q9D0R4 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddx56Q9D0R4 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddx56Q9D0R4 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC21.11■□□□□ 0.97
Ddx56Q9D0R4 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Ddx56Q9D0R4 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Ddx56Q9D0R4 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx56Q9D0R4 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx56Q9D0R4 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx56Q9D0R4 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx56Q9D0R4 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx56Q9D0R4 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.1■□□□□ 0.97
Ddx56Q9D0R4 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC21.1■□□□□ 0.97
Ddx56Q9D0R4 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx56Q9D0R4 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx56Q9D0R4 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx56Q9D0R4 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx56Q9D0R4 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx56Q9D0R4 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx56Q9D0R4 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx56Q9D0R4 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC21.09■□□□□ 0.97
Ddx56Q9D0R4 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx56Q9D0R4 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
Ddx56Q9D0R4 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx56Q9D0R4 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Ddx56Q9D0R4 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx56Q9D0R4 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
Ddx56Q9D0R4 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx56Q9D0R4 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ddx56Q9D0R4 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Ddx56Q9D0R4 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC21.08■□□□□ 0.97
Ddx56Q9D0R4 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Ddx56Q9D0R4 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC21.08■□□□□ 0.97
Ddx56Q9D0R4 Mir6236-201ENSMUST00000184437 123 ntBASIC21.08■□□□□ 0.97
Ddx56Q9D0R4 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Ddx56Q9D0R4 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Ddx56Q9D0R4 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms