Protein–RNA interactions for Protein: Q9CQX5

Cldnd1, Claudin domain-containing protein 1, mousemouse

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldnd1Q9CQX5 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cldnd1Q9CQX5 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.83■□□□□ 0.93
Cldnd1Q9CQX5 Gm12441-201ENSMUST00000121806 588 ntBASIC20.83■□□□□ 0.93
Cldnd1Q9CQX5 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cldnd1Q9CQX5 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cldnd1Q9CQX5 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Cldnd1Q9CQX5 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cldnd1Q9CQX5 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cldnd1Q9CQX5 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cldnd1Q9CQX5 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cldnd1Q9CQX5 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cldnd1Q9CQX5 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
Cldnd1Q9CQX5 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cldnd1Q9CQX5 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cldnd1Q9CQX5 Gm10653-202ENSMUST00000139570 835 ntBASIC20.81■□□□□ 0.92
Cldnd1Q9CQX5 AC164883.3-201ENSMUST00000227396 1774 ntBASIC20.81■□□□□ 0.92
Cldnd1Q9CQX5 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cldnd1Q9CQX5 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cldnd1Q9CQX5 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cldnd1Q9CQX5 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cldnd1Q9CQX5 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cldnd1Q9CQX5 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC20.8■□□□□ 0.92
Cldnd1Q9CQX5 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC20.8■□□□□ 0.92
Cldnd1Q9CQX5 Gm7514-201ENSMUST00000209475 934 ntBASIC20.8■□□□□ 0.92
Cldnd1Q9CQX5 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Cldnd1Q9CQX5 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cldnd1Q9CQX5 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cldnd1Q9CQX5 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cldnd1Q9CQX5 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cldnd1Q9CQX5 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
Cldnd1Q9CQX5 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cldnd1Q9CQX5 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cldnd1Q9CQX5 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cldnd1Q9CQX5 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cldnd1Q9CQX5 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Cldnd1Q9CQX5 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cldnd1Q9CQX5 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cldnd1Q9CQX5 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cldnd1Q9CQX5 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cldnd1Q9CQX5 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Cldnd1Q9CQX5 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cldnd1Q9CQX5 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.78■□□□□ 0.92
Cldnd1Q9CQX5 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.78■□□□□ 0.92
Cldnd1Q9CQX5 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cldnd1Q9CQX5 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cldnd1Q9CQX5 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Cldnd1Q9CQX5 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cldnd1Q9CQX5 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
Cldnd1Q9CQX5 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cldnd1Q9CQX5 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.77■□□□□ 0.92
Cldnd1Q9CQX5 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cldnd1Q9CQX5 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cldnd1Q9CQX5 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.77■□□□□ 0.91
Cldnd1Q9CQX5 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cldnd1Q9CQX5 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cldnd1Q9CQX5 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cldnd1Q9CQX5 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC20.76■□□□□ 0.91
Cldnd1Q9CQX5 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.76■□□□□ 0.91
Cldnd1Q9CQX5 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.76■□□□□ 0.91
Cldnd1Q9CQX5 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cldnd1Q9CQX5 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cldnd1Q9CQX5 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
Cldnd1Q9CQX5 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC20.75■□□□□ 0.91
Cldnd1Q9CQX5 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cldnd1Q9CQX5 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cldnd1Q9CQX5 Mir5133-201ENSMUST00000174955 77 ntBASIC20.75■□□□□ 0.91
Cldnd1Q9CQX5 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.75■□□□□ 0.91
Cldnd1Q9CQX5 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Cldnd1Q9CQX5 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cldnd1Q9CQX5 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cldnd1Q9CQX5 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cldnd1Q9CQX5 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cldnd1Q9CQX5 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cldnd1Q9CQX5 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC20.74■□□□□ 0.91
Cldnd1Q9CQX5 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC20.74■□□□□ 0.91
Cldnd1Q9CQX5 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cldnd1Q9CQX5 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cldnd1Q9CQX5 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cldnd1Q9CQX5 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Cldnd1Q9CQX5 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
Cldnd1Q9CQX5 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC20.73■□□□□ 0.91
Cldnd1Q9CQX5 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cldnd1Q9CQX5 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cldnd1Q9CQX5 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.73■□□□□ 0.91
Cldnd1Q9CQX5 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Cldnd1Q9CQX5 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cldnd1Q9CQX5 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cldnd1Q9CQX5 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cldnd1Q9CQX5 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cldnd1Q9CQX5 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cldnd1Q9CQX5 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cldnd1Q9CQX5 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cldnd1Q9CQX5 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cldnd1Q9CQX5 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.72■□□□□ 0.91
Cldnd1Q9CQX5 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.72■□□□□ 0.91
Cldnd1Q9CQX5 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cldnd1Q9CQX5 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cldnd1Q9CQX5 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cldnd1Q9CQX5 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cldnd1Q9CQX5 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms