Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rpa1Q8VEE4 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rpa1Q8VEE4 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rpa1Q8VEE4 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Rpa1Q8VEE4 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rpa1Q8VEE4 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rpa1Q8VEE4 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Rpa1Q8VEE4 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rpa1Q8VEE4 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rpa1Q8VEE4 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Rpa1Q8VEE4 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rpa1Q8VEE4 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rpa1Q8VEE4 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Rpa1Q8VEE4 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Rpa1Q8VEE4 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rpa1Q8VEE4 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rpa1Q8VEE4 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rpa1Q8VEE4 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Rpa1Q8VEE4 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
Rpa1Q8VEE4 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rpa1Q8VEE4 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rpa1Q8VEE4 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rpa1Q8VEE4 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rpa1Q8VEE4 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Rpa1Q8VEE4 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rpa1Q8VEE4 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rpa1Q8VEE4 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rpa1Q8VEE4 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rpa1Q8VEE4 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rpa1Q8VEE4 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rpa1Q8VEE4 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rpa1Q8VEE4 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rpa1Q8VEE4 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rpa1Q8VEE4 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rpa1Q8VEE4 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rpa1Q8VEE4 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Rpa1Q8VEE4 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rpa1Q8VEE4 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rpa1Q8VEE4 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rpa1Q8VEE4 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rpa1Q8VEE4 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Rpa1Q8VEE4 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Rpa1Q8VEE4 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.14■□□□□ 0.81
Rpa1Q8VEE4 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Rpa1Q8VEE4 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Rpa1Q8VEE4 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Rpa1Q8VEE4 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Rpa1Q8VEE4 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Rpa1Q8VEE4 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Rpa1Q8VEE4 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rpa1Q8VEE4 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rpa1Q8VEE4 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Rpa1Q8VEE4 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Rpa1Q8VEE4 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Rpa1Q8VEE4 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.12■□□□□ 0.81
Rpa1Q8VEE4 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.12■□□□□ 0.81
Rpa1Q8VEE4 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.12■□□□□ 0.81
Rpa1Q8VEE4 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Rpa1Q8VEE4 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Rpa1Q8VEE4 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Rpa1Q8VEE4 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Rpa1Q8VEE4 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.11■□□□□ 0.81
Rpa1Q8VEE4 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Rpa1Q8VEE4 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Rpa1Q8VEE4 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Rpa1Q8VEE4 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Rpa1Q8VEE4 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Rpa1Q8VEE4 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Rpa1Q8VEE4 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Rpa1Q8VEE4 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rpa1Q8VEE4 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rpa1Q8VEE4 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Rpa1Q8VEE4 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rpa1Q8VEE4 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rpa1Q8VEE4 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC20.1■□□□□ 0.81
Rpa1Q8VEE4 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.1■□□□□ 0.81
Rpa1Q8VEE4 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Rpa1Q8VEE4 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rpa1Q8VEE4 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Rpa1Q8VEE4 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rpa1Q8VEE4 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rpa1Q8VEE4 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rpa1Q8VEE4 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.09■□□□□ 0.81
Rpa1Q8VEE4 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.09■□□□□ 0.81
Rpa1Q8VEE4 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC20.09■□□□□ 0.81
Rpa1Q8VEE4 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.09■□□□□ 0.81
Rpa1Q8VEE4 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rpa1Q8VEE4 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rpa1Q8VEE4 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rpa1Q8VEE4 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rpa1Q8VEE4 Gm11847-201ENSMUST00000125165 1119 ntBASIC20.08■□□□□ 0.81
Rpa1Q8VEE4 Gm27502-201ENSMUST00000183495 199 ntBASIC20.08■□□□□ 0.81
Rpa1Q8VEE4 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.81
Rpa1Q8VEE4 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Rpa1Q8VEE4 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rpa1Q8VEE4 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.07■□□□□ 0.8
Rpa1Q8VEE4 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Rpa1Q8VEE4 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rpa1Q8VEE4 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.07■□□□□ 0.8
Rpa1Q8VEE4 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC20.07■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 12.9 ms