Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ushbp1Q8R370 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ushbp1Q8R370 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC22.55■■□□□ 1.2
Ushbp1Q8R370 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC22.55■■□□□ 1.2
Ushbp1Q8R370 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
Ushbp1Q8R370 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ushbp1Q8R370 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Gm7143-201ENSMUST00000222811 859 ntBASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Ushbp1Q8R370 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Ushbp1Q8R370 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ushbp1Q8R370 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ushbp1Q8R370 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Ushbp1Q8R370 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Ushbp1Q8R370 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Ushbp1Q8R370 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ushbp1Q8R370 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
Ushbp1Q8R370 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ushbp1Q8R370 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ushbp1Q8R370 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ushbp1Q8R370 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ushbp1Q8R370 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ushbp1Q8R370 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
Ushbp1Q8R370 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ushbp1Q8R370 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Ushbp1Q8R370 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Ushbp1Q8R370 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ushbp1Q8R370 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ushbp1Q8R370 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ushbp1Q8R370 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Ushbp1Q8R370 Flvcr1-202ENSMUST00000191946 1216 ntBASIC22.51■■□□□ 1.19
Ushbp1Q8R370 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ushbp1Q8R370 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ushbp1Q8R370 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Ushbp1Q8R370 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Ushbp1Q8R370 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ushbp1Q8R370 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC22.5■■□□□ 1.19
Ushbp1Q8R370 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Ushbp1Q8R370 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC22.5■■□□□ 1.19
Ushbp1Q8R370 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC22.5■■□□□ 1.19
Ushbp1Q8R370 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ushbp1Q8R370 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ushbp1Q8R370 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ushbp1Q8R370 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
Ushbp1Q8R370 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Ushbp1Q8R370 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Ushbp1Q8R370 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Ushbp1Q8R370 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC22.48■■□□□ 1.19
Ushbp1Q8R370 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Ushbp1Q8R370 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Ushbp1Q8R370 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Ushbp1Q8R370 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ushbp1Q8R370 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ushbp1Q8R370 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ushbp1Q8R370 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ushbp1Q8R370 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ushbp1Q8R370 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
Ushbp1Q8R370 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC22.47■■□□□ 1.19
Ushbp1Q8R370 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
Ushbp1Q8R370 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ushbp1Q8R370 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ushbp1Q8R370 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Ushbp1Q8R370 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Ushbp1Q8R370 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Ushbp1Q8R370 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Ushbp1Q8R370 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Ushbp1Q8R370 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Ushbp1Q8R370 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
Ushbp1Q8R370 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
Ushbp1Q8R370 Gm9207-201ENSMUST00000198773 1115 ntBASIC22.46■■□□□ 1.19
Ushbp1Q8R370 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
Ushbp1Q8R370 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms