Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Clrn1Q8K445 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Clrn1Q8K445 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Clrn1Q8K445 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Clrn1Q8K445 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
Clrn1Q8K445 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Clrn1Q8K445 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Clrn1Q8K445 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Clrn1Q8K445 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Clrn1Q8K445 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Clrn1Q8K445 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Clrn1Q8K445 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Clrn1Q8K445 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC18.95■□□□□ 0.62
Clrn1Q8K445 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Clrn1Q8K445 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Clrn1Q8K445 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Clrn1Q8K445 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Clrn1Q8K445 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Clrn1Q8K445 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Clrn1Q8K445 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Clrn1Q8K445 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Clrn1Q8K445 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Clrn1Q8K445 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Clrn1Q8K445 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Clrn1Q8K445 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Clrn1Q8K445 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Clrn1Q8K445 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Clrn1Q8K445 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clrn1Q8K445 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Clrn1Q8K445 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clrn1Q8K445 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clrn1Q8K445 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clrn1Q8K445 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC18.93■□□□□ 0.62
Clrn1Q8K445 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Clrn1Q8K445 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clrn1Q8K445 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clrn1Q8K445 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clrn1Q8K445 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clrn1Q8K445 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clrn1Q8K445 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clrn1Q8K445 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Clrn1Q8K445 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Clrn1Q8K445 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Clrn1Q8K445 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Clrn1Q8K445 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Clrn1Q8K445 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC18.92■□□□□ 0.62
Clrn1Q8K445 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Clrn1Q8K445 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Clrn1Q8K445 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Clrn1Q8K445 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Clrn1Q8K445 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Clrn1Q8K445 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Clrn1Q8K445 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Clrn1Q8K445 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Clrn1Q8K445 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC18.91■□□□□ 0.62
Clrn1Q8K445 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Clrn1Q8K445 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC18.91■□□□□ 0.62
Clrn1Q8K445 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Clrn1Q8K445 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Clrn1Q8K445 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Clrn1Q8K445 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Clrn1Q8K445 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Clrn1Q8K445 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Clrn1Q8K445 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.91■□□□□ 0.62
Clrn1Q8K445 Gm43530-201ENSMUST00000195920 274 ntBASIC18.91■□□□□ 0.62
Clrn1Q8K445 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Clrn1Q8K445 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.91■□□□□ 0.62
Clrn1Q8K445 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Clrn1Q8K445 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC18.91■□□□□ 0.62
Clrn1Q8K445 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Clrn1Q8K445 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clrn1Q8K445 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clrn1Q8K445 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clrn1Q8K445 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC18.9■□□□□ 0.62
Clrn1Q8K445 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Clrn1Q8K445 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC18.9■□□□□ 0.62
Clrn1Q8K445 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC18.9■□□□□ 0.62
Clrn1Q8K445 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Clrn1Q8K445 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clrn1Q8K445 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Clrn1Q8K445 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Clrn1Q8K445 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.62
Clrn1Q8K445 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Clrn1Q8K445 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC18.89■□□□□ 0.62
Clrn1Q8K445 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clrn1Q8K445 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Clrn1Q8K445 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clrn1Q8K445 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clrn1Q8K445 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clrn1Q8K445 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clrn1Q8K445 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Clrn1Q8K445 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clrn1Q8K445 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clrn1Q8K445 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Clrn1Q8K445 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clrn1Q8K445 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Clrn1Q8K445 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Clrn1Q8K445 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Clrn1Q8K445 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Clrn1Q8K445 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms