Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trub1Q8C0D0 Gm43530-201ENSMUST00000195920 274 ntBASIC20.83■□□□□ 0.93
Trub1Q8C0D0 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Trub1Q8C0D0 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trub1Q8C0D0 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trub1Q8C0D0 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC20.83■□□□□ 0.92
Trub1Q8C0D0 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Trub1Q8C0D0 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Trub1Q8C0D0 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trub1Q8C0D0 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trub1Q8C0D0 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trub1Q8C0D0 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trub1Q8C0D0 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trub1Q8C0D0 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trub1Q8C0D0 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trub1Q8C0D0 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trub1Q8C0D0 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Trub1Q8C0D0 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trub1Q8C0D0 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trub1Q8C0D0 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trub1Q8C0D0 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trub1Q8C0D0 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Trub1Q8C0D0 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trub1Q8C0D0 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Trub1Q8C0D0 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trub1Q8C0D0 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trub1Q8C0D0 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trub1Q8C0D0 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trub1Q8C0D0 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trub1Q8C0D0 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trub1Q8C0D0 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC20.79■□□□□ 0.92
Trub1Q8C0D0 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC20.79■□□□□ 0.92
Trub1Q8C0D0 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trub1Q8C0D0 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trub1Q8C0D0 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Trub1Q8C0D0 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Trub1Q8C0D0 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trub1Q8C0D0 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trub1Q8C0D0 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trub1Q8C0D0 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trub1Q8C0D0 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.78■□□□□ 0.92
Trub1Q8C0D0 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trub1Q8C0D0 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trub1Q8C0D0 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trub1Q8C0D0 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC20.78■□□□□ 0.92
Trub1Q8C0D0 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trub1Q8C0D0 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.78■□□□□ 0.92
Trub1Q8C0D0 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Trub1Q8C0D0 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trub1Q8C0D0 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.77■□□□□ 0.92
Trub1Q8C0D0 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trub1Q8C0D0 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Trub1Q8C0D0 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Trub1Q8C0D0 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Trub1Q8C0D0 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trub1Q8C0D0 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Trub1Q8C0D0 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trub1Q8C0D0 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trub1Q8C0D0 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trub1Q8C0D0 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Trub1Q8C0D0 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trub1Q8C0D0 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trub1Q8C0D0 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trub1Q8C0D0 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.76■□□□□ 0.91
Trub1Q8C0D0 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trub1Q8C0D0 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trub1Q8C0D0 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.75■□□□□ 0.91
Trub1Q8C0D0 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trub1Q8C0D0 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC20.75■□□□□ 0.91
Trub1Q8C0D0 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trub1Q8C0D0 Krt8-ps-201ENSMUST00000208495 945 ntBASIC20.75■□□□□ 0.91
Trub1Q8C0D0 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trub1Q8C0D0 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trub1Q8C0D0 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trub1Q8C0D0 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trub1Q8C0D0 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Trub1Q8C0D0 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trub1Q8C0D0 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trub1Q8C0D0 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
Trub1Q8C0D0 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trub1Q8C0D0 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trub1Q8C0D0 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trub1Q8C0D0 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
Trub1Q8C0D0 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trub1Q8C0D0 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trub1Q8C0D0 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trub1Q8C0D0 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trub1Q8C0D0 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trub1Q8C0D0 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trub1Q8C0D0 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC20.73■□□□□ 0.91
Trub1Q8C0D0 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trub1Q8C0D0 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Trub1Q8C0D0 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Trub1Q8C0D0 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.72■□□□□ 0.91
Trub1Q8C0D0 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trub1Q8C0D0 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Trub1Q8C0D0 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Trub1Q8C0D0 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trub1Q8C0D0 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trub1Q8C0D0 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC20.72■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms