Protein–RNA interactions for Protein: Q8BXJ2

Trerf1, Transcriptional-regulating factor 1, mousemouse

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trerf1Q8BXJ2 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trerf1Q8BXJ2 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trerf1Q8BXJ2 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trerf1Q8BXJ2 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trerf1Q8BXJ2 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.96■□□□□ 0.95
Trerf1Q8BXJ2 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trerf1Q8BXJ2 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.96■□□□□ 0.95
Trerf1Q8BXJ2 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trerf1Q8BXJ2 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.96■□□□□ 0.95
Trerf1Q8BXJ2 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC20.95■□□□□ 0.95
Trerf1Q8BXJ2 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trerf1Q8BXJ2 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Trerf1Q8BXJ2 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trerf1Q8BXJ2 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.93■□□□□ 0.94
Trerf1Q8BXJ2 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trerf1Q8BXJ2 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trerf1Q8BXJ2 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trerf1Q8BXJ2 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trerf1Q8BXJ2 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
Trerf1Q8BXJ2 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trerf1Q8BXJ2 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trerf1Q8BXJ2 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Trerf1Q8BXJ2 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC20.92■□□□□ 0.94
Trerf1Q8BXJ2 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trerf1Q8BXJ2 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Trerf1Q8BXJ2 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trerf1Q8BXJ2 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Trerf1Q8BXJ2 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Trerf1Q8BXJ2 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trerf1Q8BXJ2 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trerf1Q8BXJ2 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trerf1Q8BXJ2 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trerf1Q8BXJ2 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trerf1Q8BXJ2 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Trerf1Q8BXJ2 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Trerf1Q8BXJ2 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trerf1Q8BXJ2 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Trerf1Q8BXJ2 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Trerf1Q8BXJ2 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trerf1Q8BXJ2 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trerf1Q8BXJ2 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trerf1Q8BXJ2 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trerf1Q8BXJ2 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trerf1Q8BXJ2 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.89■□□□□ 0.93
Trerf1Q8BXJ2 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.89■□□□□ 0.93
Trerf1Q8BXJ2 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trerf1Q8BXJ2 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trerf1Q8BXJ2 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trerf1Q8BXJ2 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trerf1Q8BXJ2 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trerf1Q8BXJ2 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trerf1Q8BXJ2 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC20.88■□□□□ 0.93
Trerf1Q8BXJ2 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC20.88■□□□□ 0.93
Trerf1Q8BXJ2 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trerf1Q8BXJ2 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trerf1Q8BXJ2 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.88■□□□□ 0.93
Trerf1Q8BXJ2 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trerf1Q8BXJ2 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trerf1Q8BXJ2 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trerf1Q8BXJ2 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC20.87■□□□□ 0.93
Trerf1Q8BXJ2 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
Trerf1Q8BXJ2 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trerf1Q8BXJ2 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trerf1Q8BXJ2 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC20.87■□□□□ 0.93
Trerf1Q8BXJ2 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trerf1Q8BXJ2 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trerf1Q8BXJ2 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trerf1Q8BXJ2 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC20.86■□□□□ 0.93
Trerf1Q8BXJ2 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trerf1Q8BXJ2 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Trerf1Q8BXJ2 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trerf1Q8BXJ2 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms