Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC27.91■■■□□ 2.06
Usp40Q8BWR4 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Usp40Q8BWR4 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Usp40Q8BWR4 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Usp40Q8BWR4 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Usp40Q8BWR4 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Usp40Q8BWR4 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Usp40Q8BWR4 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
Usp40Q8BWR4 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC27.89■■■□□ 2.06
Usp40Q8BWR4 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
Usp40Q8BWR4 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
Usp40Q8BWR4 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
Usp40Q8BWR4 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Usp40Q8BWR4 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
Usp40Q8BWR4 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
Usp40Q8BWR4 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC27.88■■■□□ 2.05
Usp40Q8BWR4 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC27.88■■■□□ 2.05
Usp40Q8BWR4 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
Usp40Q8BWR4 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Usp40Q8BWR4 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Usp40Q8BWR4 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Usp40Q8BWR4 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Usp40Q8BWR4 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC27.86■■■□□ 2.05
Usp40Q8BWR4 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC27.86■■■□□ 2.05
Usp40Q8BWR4 Gm26571-201ENSMUST00000181399 666 ntBASIC27.86■■■□□ 2.05
Usp40Q8BWR4 AC164629.5-201ENSMUST00000220387 632 ntBASIC27.86■■■□□ 2.05
Usp40Q8BWR4 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
Usp40Q8BWR4 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
Usp40Q8BWR4 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
Usp40Q8BWR4 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC27.86■■■□□ 2.05
Usp40Q8BWR4 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
Usp40Q8BWR4 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
Usp40Q8BWR4 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
Usp40Q8BWR4 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC27.85■■■□□ 2.05
Usp40Q8BWR4 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
Usp40Q8BWR4 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
Usp40Q8BWR4 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC27.84■■■□□ 2.05
Usp40Q8BWR4 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Usp40Q8BWR4 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Usp40Q8BWR4 Gm10129-202ENSMUST00000193100 1316 ntBASIC27.84■■■□□ 2.05
Usp40Q8BWR4 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC27.84■■■□□ 2.05
Usp40Q8BWR4 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.05
Usp40Q8BWR4 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Usp40Q8BWR4 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC27.83■■■□□ 2.05
Usp40Q8BWR4 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
Usp40Q8BWR4 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
Usp40Q8BWR4 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
Usp40Q8BWR4 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
Usp40Q8BWR4 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Usp40Q8BWR4 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Usp40Q8BWR4 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.04
Usp40Q8BWR4 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC27.83■■■□□ 2.04
Usp40Q8BWR4 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Usp40Q8BWR4 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Usp40Q8BWR4 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Usp40Q8BWR4 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC27.82■■■□□ 2.04
Usp40Q8BWR4 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Usp40Q8BWR4 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC27.82■■■□□ 2.04
Usp40Q8BWR4 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC27.82■■■□□ 2.04
Usp40Q8BWR4 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Usp40Q8BWR4 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC27.81■■■□□ 2.04
Usp40Q8BWR4 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC27.81■■■□□ 2.04
Usp40Q8BWR4 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
Usp40Q8BWR4 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC27.81■■■□□ 2.04
Usp40Q8BWR4 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
Usp40Q8BWR4 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
Usp40Q8BWR4 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC27.8■■■□□ 2.04
Usp40Q8BWR4 AC099934.2-201ENSMUST00000196389 70 ntBASIC27.8■■■□□ 2.04
Usp40Q8BWR4 AC156953.1-201ENSMUST00000196953 70 ntBASIC27.8■■■□□ 2.04
Usp40Q8BWR4 AC157822.2-201ENSMUST00000200291 70 ntBASIC27.8■■■□□ 2.04
Usp40Q8BWR4 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC27.8■■■□□ 2.04
Usp40Q8BWR4 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC27.8■■■□□ 2.04
Usp40Q8BWR4 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Usp40Q8BWR4 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC27.79■■■□□ 2.04
Usp40Q8BWR4 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Usp40Q8BWR4 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Usp40Q8BWR4 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Usp40Q8BWR4 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC27.78■■■□□ 2.04
Usp40Q8BWR4 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Usp40Q8BWR4 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC27.78■■■□□ 2.04
Usp40Q8BWR4 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Usp40Q8BWR4 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
Usp40Q8BWR4 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC27.78■■■□□ 2.04
Usp40Q8BWR4 Gm42642-201ENSMUST00000200683 355 ntBASIC27.77■■■□□ 2.04
Usp40Q8BWR4 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Usp40Q8BWR4 Dmtn-209ENSMUST00000228295 2572 ntBASIC27.76■■■□□ 2.03
Usp40Q8BWR4 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
Usp40Q8BWR4 Gm11421-201ENSMUST00000122124 294 ntBASIC27.76■■■□□ 2.03
Usp40Q8BWR4 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC27.76■■■□□ 2.03
Usp40Q8BWR4 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC27.76■■■□□ 2.03
Usp40Q8BWR4 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
Usp40Q8BWR4 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
Usp40Q8BWR4 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
Usp40Q8BWR4 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
Usp40Q8BWR4 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
Usp40Q8BWR4 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Usp40Q8BWR4 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC27.74■■■□□ 2.03
Usp40Q8BWR4 Gm10849-201ENSMUST00000100397 618 ntBASIC27.74■■■□□ 2.03
Usp40Q8BWR4 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC27.74■■■□□ 2.03
Usp40Q8BWR4 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms