Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.84■□□□□ 0.93
Ccdc40Q8BI79 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ccdc40Q8BI79 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Ccdc40Q8BI79 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ccdc40Q8BI79 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ccdc40Q8BI79 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.92
Ccdc40Q8BI79 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ccdc40Q8BI79 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ccdc40Q8BI79 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ccdc40Q8BI79 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC20.82■□□□□ 0.92
Ccdc40Q8BI79 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc40Q8BI79 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.82■□□□□ 0.92
Ccdc40Q8BI79 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc40Q8BI79 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc40Q8BI79 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc40Q8BI79 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc40Q8BI79 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc40Q8BI79 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc40Q8BI79 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
Ccdc40Q8BI79 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc40Q8BI79 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc40Q8BI79 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc40Q8BI79 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc40Q8BI79 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc40Q8BI79 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc40Q8BI79 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Ccdc40Q8BI79 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC20.8■□□□□ 0.92
Ccdc40Q8BI79 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Ccdc40Q8BI79 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc40Q8BI79 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.79■□□□□ 0.92
Ccdc40Q8BI79 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc40Q8BI79 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Ccdc40Q8BI79 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc40Q8BI79 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Ccdc40Q8BI79 Gm7417-201ENSMUST00000192950 473 ntBASIC20.79■□□□□ 0.92
Ccdc40Q8BI79 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc40Q8BI79 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc40Q8BI79 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc40Q8BI79 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc40Q8BI79 Gm7143-201ENSMUST00000222811 859 ntBASIC20.78■□□□□ 0.92
Ccdc40Q8BI79 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc40Q8BI79 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
Ccdc40Q8BI79 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Ccdc40Q8BI79 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc40Q8BI79 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Ccdc40Q8BI79 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc40Q8BI79 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC20.77■□□□□ 0.92
Ccdc40Q8BI79 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc40Q8BI79 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc40Q8BI79 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc40Q8BI79 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc40Q8BI79 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc40Q8BI79 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Ccdc40Q8BI79 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc40Q8BI79 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc40Q8BI79 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc40Q8BI79 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc40Q8BI79 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc40Q8BI79 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC20.76■□□□□ 0.91
Ccdc40Q8BI79 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc40Q8BI79 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC20.76■□□□□ 0.91
Ccdc40Q8BI79 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc40Q8BI79 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc40Q8BI79 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc40Q8BI79 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc40Q8BI79 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC20.75■□□□□ 0.91
Ccdc40Q8BI79 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc40Q8BI79 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc40Q8BI79 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc40Q8BI79 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC20.75■□□□□ 0.91
Ccdc40Q8BI79 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc40Q8BI79 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Ccdc40Q8BI79 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc40Q8BI79 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc40Q8BI79 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc40Q8BI79 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc40Q8BI79 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc40Q8BI79 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc40Q8BI79 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc40Q8BI79 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc40Q8BI79 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc40Q8BI79 Etf1-202ENSMUST00000180351 108 ntBASIC20.74■□□□□ 0.91
Ccdc40Q8BI79 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc40Q8BI79 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.73■□□□□ 0.91
Ccdc40Q8BI79 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Ccdc40Q8BI79 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc40Q8BI79 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc40Q8BI79 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc40Q8BI79 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc40Q8BI79 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC20.73■□□□□ 0.91
Ccdc40Q8BI79 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc40Q8BI79 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.73■□□□□ 0.91
Ccdc40Q8BI79 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc40Q8BI79 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc40Q8BI79 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc40Q8BI79 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc40Q8BI79 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc40Q8BI79 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Ccdc40Q8BI79 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms