Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rnf220Q6PDX6 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Rnf220Q6PDX6 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Rnf220Q6PDX6 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Rnf220Q6PDX6 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Rnf220Q6PDX6 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC18.94■□□□□ 0.62
Rnf220Q6PDX6 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Rnf220Q6PDX6 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC18.93■□□□□ 0.62
Rnf220Q6PDX6 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Rnf220Q6PDX6 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rnf220Q6PDX6 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rnf220Q6PDX6 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rnf220Q6PDX6 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rnf220Q6PDX6 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Rnf220Q6PDX6 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rnf220Q6PDX6 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rnf220Q6PDX6 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Rnf220Q6PDX6 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rnf220Q6PDX6 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Rnf220Q6PDX6 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rnf220Q6PDX6 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rnf220Q6PDX6 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rnf220Q6PDX6 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rnf220Q6PDX6 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rnf220Q6PDX6 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Rnf220Q6PDX6 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rnf220Q6PDX6 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Gm5784-201ENSMUST00000179344 2478 ntBASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rnf220Q6PDX6 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Rnf220Q6PDX6 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Rnf220Q6PDX6 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC18.89■□□□□ 0.61
Rnf220Q6PDX6 Gm37035-201ENSMUST00000194809 2148 ntBASIC18.89■□□□□ 0.61
Rnf220Q6PDX6 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Rnf220Q6PDX6 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Rnf220Q6PDX6 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Rnf220Q6PDX6 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rnf220Q6PDX6 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Rnf220Q6PDX6 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Rnf220Q6PDX6 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC18.88■□□□□ 0.61
Rnf220Q6PDX6 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rnf220Q6PDX6 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Rnf220Q6PDX6 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rnf220Q6PDX6 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rnf220Q6PDX6 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rnf220Q6PDX6 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rnf220Q6PDX6 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rnf220Q6PDX6 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rnf220Q6PDX6 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf220Q6PDX6 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf220Q6PDX6 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf220Q6PDX6 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf220Q6PDX6 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf220Q6PDX6 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Rnf220Q6PDX6 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf220Q6PDX6 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf220Q6PDX6 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf220Q6PDX6 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Rnf220Q6PDX6 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rnf220Q6PDX6 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
Rnf220Q6PDX6 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.85■□□□□ 0.61
Rnf220Q6PDX6 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rnf220Q6PDX6 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rnf220Q6PDX6 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rnf220Q6PDX6 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf220Q6PDX6 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms