Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col7a1Q63870 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Col7a1Q63870 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC17.19■□□□□ 0.34
Col7a1Q63870 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC17.18■□□□□ 0.34
Col7a1Q63870 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col7a1Q63870 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
Col7a1Q63870 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC17.18■□□□□ 0.34
Col7a1Q63870 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Col7a1Q63870 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col7a1Q63870 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col7a1Q63870 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC17.17■□□□□ 0.34
Col7a1Q63870 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col7a1Q63870 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
Col7a1Q63870 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Col7a1Q63870 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC17.17■□□□□ 0.34
Col7a1Q63870 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col7a1Q63870 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col7a1Q63870 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col7a1Q63870 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col7a1Q63870 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col7a1Q63870 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col7a1Q63870 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col7a1Q63870 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col7a1Q63870 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC17.16■□□□□ 0.34
Col7a1Q63870 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col7a1Q63870 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col7a1Q63870 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col7a1Q63870 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC17.15■□□□□ 0.34
Col7a1Q63870 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col7a1Q63870 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col7a1Q63870 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC17.15■□□□□ 0.34
Col7a1Q63870 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col7a1Q63870 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC17.15■□□□□ 0.34
Col7a1Q63870 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Col7a1Q63870 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Col7a1Q63870 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.34
Col7a1Q63870 Gm7290-201ENSMUST00000104990 617 ntBASIC17.14■□□□□ 0.33
Col7a1Q63870 Gm12918-201ENSMUST00000120234 636 ntBASIC17.14■□□□□ 0.33
Col7a1Q63870 Gm15710-201ENSMUST00000121821 636 ntBASIC17.14■□□□□ 0.33
Col7a1Q63870 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
Col7a1Q63870 Gm5075-201ENSMUST00000196916 622 ntBASIC17.14■□□□□ 0.33
Col7a1Q63870 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col7a1Q63870 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC17.14■□□□□ 0.33
Col7a1Q63870 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC17.14■□□□□ 0.33
Col7a1Q63870 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC17.14■□□□□ 0.33
Col7a1Q63870 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Col7a1Q63870 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col7a1Q63870 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col7a1Q63870 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col7a1Q63870 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col7a1Q63870 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col7a1Q63870 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col7a1Q63870 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col7a1Q63870 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col7a1Q63870 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col7a1Q63870 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col7a1Q63870 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col7a1Q63870 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col7a1Q63870 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Col7a1Q63870 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC17.12■□□□□ 0.33
Col7a1Q63870 Gm26524-201ENSMUST00000192339 390 ntBASIC17.12■□□□□ 0.33
Col7a1Q63870 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Col7a1Q63870 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col7a1Q63870 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Col7a1Q63870 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col7a1Q63870 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Col7a1Q63870 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC17.12■□□□□ 0.33
Col7a1Q63870 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col7a1Q63870 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col7a1Q63870 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col7a1Q63870 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col7a1Q63870 Gm9484-201ENSMUST00000195892 1159 ntBASIC17.12■□□□□ 0.33
Col7a1Q63870 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.12■□□□□ 0.33
Col7a1Q63870 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col7a1Q63870 Gm11643-201ENSMUST00000119578 864 ntBASIC17.11■□□□□ 0.33
Col7a1Q63870 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Col7a1Q63870 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col7a1Q63870 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC17.11■□□□□ 0.33
Col7a1Q63870 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
Col7a1Q63870 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col7a1Q63870 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC17.11■□□□□ 0.33
Col7a1Q63870 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col7a1Q63870 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col7a1Q63870 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col7a1Q63870 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col7a1Q63870 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col7a1Q63870 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col7a1Q63870 Gm10459-201ENSMUST00000202708 1155 ntBASIC17.1■□□□□ 0.33
Col7a1Q63870 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col7a1Q63870 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC17.1■□□□□ 0.33
Col7a1Q63870 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Col7a1Q63870 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC17.1■□□□□ 0.33
Col7a1Q63870 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col7a1Q63870 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Col7a1Q63870 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col7a1Q63870 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col7a1Q63870 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col7a1Q63870 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col7a1Q63870 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col7a1Q63870 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms